Evidence map›Paper›PMID 15231738›Full record

ArticleGenes & development2004

The MTE, a new core promoter element for transcription by RNA polymerase II.

Chin Yan Lim, Buyung Santoso, Thomas Boulay, Emily Dong, Uwe Ohler, James T Kadonaga

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 117 papers.

0numbers the graph read from it
0cells of the map it votes in
117citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

117 citing papers in PubMed, 204 citations in OpenAlex.

  1. Embedded CRISPRi Enhances Gene-Silencing Efficiency in Drosophila.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2026
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  13. Development of Terminator-Promoter Bifunctional Elements for Application inInternational journal of molecular sciences · 2023
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  15. Analysis of theGenes & development · 2023
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  16. Review
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57 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Chin Yan LimSection of Molecular Biology, University of California at San Diego, La Jolla, California 92093, USA.
Buyung Santoso
Thomas Boulay
Emily Dong
Uwe Ohler
James T Kadonaga
Massachusetts Institute of Technology · USUniversity of California, San Diego · US

Funding

MECHANISMS OF TRANSCRIPTIONAL REGULATION IN EUKARYOTESR01GM041249 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI KADONAGA, JAMES T. · 1989 to 2016
$5.4M
NIGMS NIH HHS GM41249NIGMS NIH HHS R01 GM041249
6 · The paper itself

Abstract

The core promoter is the ultimate target of the vast network of regulatory factors that contribute to the initiation of transcription by RNA polymerase II. Here we describe the MTE (motif ten element), a new core promoter element that appears to be conserved from Drosophila to humans. The MTE promotes transcription by RNA polymerase II when it is located precisely at positions +18 to +27 relative to A(+1) in the initiator (Inr) element. MTE sequences from +18 to +22 relative to A(+1) are important for basal transcription, and a region from +18 to +27 is sufficient to confer MTE activity to heterologous core promoters. The MTE requires the Inr, but functions independently of the TATA-box and DPE. Notably, the loss of transcriptional activity upon mutation of a TATA-box or DPE can be compensated by the addition of an MTE. In addition, the MTE exhibits strong synergism with the TATA-box as well as the DPE. These findings indicate that the MTE is a novel downstream core promoter element that is important for transcription by RNA polymerase II.

Indexed as

Promoter Regions, GeneticTranscription, GeneticBase SequenceConserved SequenceHeLa CellsHumansRNA Polymerase IITATA BoxTranscription FactorsTranscription Factor TFIIDRNA Polymerase IITranscription FactorsTranscription Factor TFIID

Identifiers

PMID15231738
PMCPMC443522
OpenAlexW2146975493

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.