Evidence map›Paper›PMID 15226823›Full record

ArticlePLoS biology2004

Genomic analysis of mouse retinal development.

Seth Blackshaw, Sanjiv Harpavat, Jeff Trimarchi, Li Cai, Haiyan Huang, Winston P Kuo, Griffin Weber, Kyungjoon Lee, Rebecca E Fraioli, Seo-Hee Cho and 5 more

Open access · goldAbstract read
In one paragraph

Article in PLoS biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 338 papers.

0numbers the graph read from it
0cells of the map it votes in
338citing papers in PubMed
10.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

338 citing papers in PubMed, 590 citations in OpenAlex.

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  18. Analysis of the Upregulated Expression Mechanism of Apoptotic Chromatin Condensation Inducer 1 in Hepatocellular Carcinoma Based on Bioinformatics.The Turkish journal of gastroenterology : the official journal of Turkish Society of Gastroenterology · 2024
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  19. Review
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278 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Seth BlackshawDepartment of Genetics and Howard Hughes Medical Institute, Harvard Medical School, Boston, Massachusetts, USA.
Sanjiv Harpavat
Jeff Trimarchi
Li Cai
Haiyan Huang
Winston P Kuo
Griffin Weber
Kyungjoon Lee
Rebecca E Fraioli
Seo-Hee Cho
Rachel Yung
Elizabeth Asch
Lucila Ohno-Machado
Wing H Wong
Constance L Cepko
Harvard University · USHoward Hughes Medical Institute · USDecision Systems (United States) · USBoston Children's Hospital · USHarvard University Press · USUniversity of California, Berkeley · US

Funding

MOLECULAR BIOLOGY OF RETINAL DEVELOPMENTR01EY008064 · NEI · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI CEPKO, CONSTANCE L · 1989 to 2013
$4.0M
Center for Computational Study of Biological SystemsP20CA096470 · NCI · HARVARD UNIVERSITY (SCH OF PUBLIC HLTH) · PI LIU, JUN S · 2002 to 2004
$2.1M
NCI NIH HHS P20 CA096470NCI NIH HHS P20 CA96470NEI NIH HHS EY08064NEI NIH HHS R01 EY008064
6 · The paper itself

Abstract

The vertebrate retina is comprised of seven major cell types that are generated in overlapping but well-defined intervals. To identify genes that might regulate retinal development, gene expression in the developing retina was profiled at multiple time points using serial analysis of gene expression (SAGE). The expression patterns of 1,051 genes that showed developmentally dynamic expression by SAGE were investigated using in situ hybridization. A molecular atlas of gene expression in the developing and mature retina was thereby constructed, along with a taxonomic classification of developmental gene expression patterns. Genes were identified that label both temporal and spatial subsets of mitotic progenitor cells. For each developing and mature major retinal cell type, genes selectively expressed in that cell type were identified. The gene expression profiles of retinal Müller glia and mitotic progenitor cells were found to be highly similar, suggesting that Müller glia might serve to produce multiple retinal cell types under the right conditions. In addition, multiple transcripts that were evolutionarily conserved that did not appear to encode open reading frames of more than 100 amino acids in length ("noncoding RNAs") were found to be dynamically and specifically expressed in developing and mature retinal cell types. Finally, many photoreceptor-enriched genes that mapped to chromosomal intervals containing retinal disease genes were identified. These data serve as a starting point for functional investigations of the roles of these genes in retinal development and physiology.

Indexed as

Gene Expression Regulation, DevelopmentalGenomeAnimalsBromodeoxyuridineCell LineageChromosome MappingCluster AnalysisComputational BiologyDatabases, GeneticExpressed Sequence TagsGene Expression RegulationGene LibraryIn Situ HybridizationInterneuronsMiceMitosisBromodeoxyuridineRNA, Messenger

Identifiers

PMID15226823
PMCPMC439783
OpenAlexW2033585891

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.