Evidence map›Paper›PMID 15226416›Full record

ArticleMolecular and cellular biology2004

Transcription regulatory complexes bind the human T-cell leukemia virus 5' and 3' long terminal repeats to control gene expression.

Isabelle Lemasson, Nicholas J Polakowski, Paul J Laybourn, Jennifer K Nyborg

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Upregulation of Neuropilin-1 Inhibits HTLV-1 Infection.Pathogens (Basel, Switzerland) · 2023
    Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Latency Reversing Agents: Kick and Kill of HTLV-1?International journal of molecular sciences · 2021
    Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Isabelle LemassonDepartment of Biochemistry and Molecular Biology, Colorado State University, Fort Collins, CO 80523-1870, USA.
Nicholas J Polakowski
Paul J Laybourn
Jennifer K Nyborg
Colorado State University · US

Funding

TRANSCRIPTIONAL REGULATION BY THE HTLV-I TAX PROTEINR01CA055035 · NCI · COLORADO STATE UNIVERSITY-FORT COLLINS · PI NYBORG, JENNIFER K. · 1994 to 2013
$3.9M
Tax Transactivation in the Context of ChromatinR01CA087540 · NCI · COLORADO STATE UNIVERSITY-FORT COLLINS · PI LAYBOURN, PAUL JAMES · 2001 to 2005
$1.3M
TAX1 REGULATION OF HTLV-I TRANSCRIPTION AND REPLICATIONR55CA055035 · NCI · COLORADO STATE UNIVERSITY-FORT COLLINS · PI NYBORG, JENNIFER K. · 1991 to 1991
–
NCI NIH HHS CA55035NCI NIH HHS CA87540NCI NIH HHS R01 CA055035NCI NIH HHS R01 CA087540
6 · The paper itself

Abstract

The human T-cell leukemia virus type 1 (HTLV-1) is a retrovirus that integrates randomly into the T-cell genome. Two long terminal repeats (LTRs) flank the integrated provirus. The upstream and downstream LTRs carry identical promoter sequences. Studies with other retroviruses suggest that the downstream promoter is silent and that RNA polymerases initiating at the upstream promoter proceed through the 3' LTR. In this study, we used the chromatin immunoprecipitation assay to compare the binding of transcription regulatory proteins at both the upstream and downstream promoters in HTLV-1-infected cell lines and adult T-cell leukemia-lymphoma cells. Unexpectedly, we detected a nearly equal distribution of activator (Tax, CREB, ATF-1, ATF-2, c-Fos, and c-Jun) and regulatory protein (CBP, p300, TAF(II)250, and polymerase II) binding at both the upstream and downstream promoters. Consistent with this observation, we found that the downstream promoter was transcriptionally active, suggesting that the two promoters are functionally equivalent. We also detected asymmetrical binding of histone deacetylases (HDAC-1, -2, and -3) at both promoters. All three HDACs strongly repressed Tax transactivation, and this repression correlated with displacement of Tax from the HTLV-1 promoter. These effects were reciprocal, as Tax expression reversed HDAC repression and displaced HDACs from the HTLV-1 promoter. These data suggest that HTLV-1 transcriptional regulation at both the 5' and 3' LTRs is mediated, in part, through the mutually exclusive binding of Tax and HDACs at the proviral promoters.

Indexed as

Gene Expression Regulation, ViralTerminal Repeat SequencesTranscription, Genetic3' Flanking Region5' Flanking RegionAdultAnimalsCell LineGene Products, taxHistone DeacetylasesHistonesHumansHuman T-lymphotropic virus 1Macromolecular SubstancesPromoter Regions, GeneticProtein BindingGene Products, taxHistone DeacetylasesHistonesMacromolecular SubstancesTranscription Factors

Identifiers

PMID15226416
PMCPMC434238
OpenAlexW2100506265

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.