Evidence map›Paper›PMID 15226310›Full record

ArticleThe Journal of cell biology2004

DNA damage stabilizes interaction of CSB with the transcription elongation machinery.

Vincent van den Boom, Elisabetta Citterio, Deborah Hoogstraten, Angelika Zotter, Jean-Marc Egly, Wiggert A van Cappellen, Jan H J Hoeijmakers, Adriaan B Houtsmuller, Wim Vermeulen

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 89 papers.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed
3.8field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 162 citations in OpenAlex.

  1. DNA Repair Mechanisms.Methods in molecular biology (Clifton, N.J.) · 2027
    Review
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  3. Article
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  6. Review
  7. Review
  8. Article
  9. Review
  10. Review
  11. Article
  12. The ARK2N-CK2 complex initiates transcription-coupled repair through enhancing the interaction of CSB with lesion-stalled RNAPII.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  13. Article
  14. Article
  15. Review
  16. Article
  17. Nucleotide excision repair: a versatile and smart toolkit.Acta biochimica et biophysica Sinica · 2022
    Review
  18. Review
  19. Article
  20. Article

29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 2 countries.

Vincent van den BoomDepartment of Cell Biology and Genetics, Erasmus MC, P.O. Box 1738, 3000 DR Rotterdam, Netherlands.
Elisabetta Citterio
Deborah Hoogstraten
Angelika Zotter
Jean-Marc Egly
Wiggert A van Cappellen
Jan H J Hoeijmakers
Adriaan B Houtsmuller
Wim Vermeulen
Erasmus MC · NLInserm · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Cockayne syndrome B (CSB) protein is essential for transcription-coupled DNA repair (TCR), which is dependent on RNA polymerase II elongation. TCR is required to quickly remove the cytotoxic transcription-blocking DNA lesions. Functional GFP-tagged CSB, expressed at physiological levels, was homogeneously dispersed throughout the nucleoplasm in addition to bright nuclear foci and nucleolar accumulation. Photobleaching studies showed that GFP-CSB, as part of a high molecular weight complex, transiently interacts with the transcription machinery. Upon (DNA damage-induced) transcription arrest CSB binding these interactions are prolonged, most likely reflecting actual engagement of CSB in TCR. These findings are consistent with a model in which CSB monitors progression of transcription by regularly probing elongation complexes and becomes more tightly associated to these complexes when TCR is active.

Indexed as

DNA DamageTranscription, GeneticActive Transport, Cell NucleusCell LineCell NucleusCells, CulturedCockayne SyndromeComputer SimulationDNA-Binding ProteinsDNA, ComplementaryDNA HelicasesDNA RepairDNA Repair EnzymesFibroblastsGreen Fluorescent ProteinsHumansDNA-Binding ProteinsDNA, ComplementaryDNA HelicasesDNA Repair EnzymesERCC6 protein, humanGreen Fluorescent ProteinsLuminescent ProteinsPoly-ADP-Ribose Binding ProteinsRecombinant Fusion ProteinsRNA Polymerase IIXeroderma Pigmentosum Group A ProteinXPA protein, human

Identifiers

PMID15226310
PMCPMC2172148
OpenAlexW2101923550

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.