Evidence map›Paper›PMID 15217781›Full record

ArticleAmerican journal of physiology. Gastrointestinal and liver physiology2004

Control of differentiation-induced calbindin-D9k gene expression in Caco-2 cells by cdx-2 and HNF-1alpha.

Liyong Wang, Anna Klopot, Jean-Noel Freund, Lauren N Dowling, Stephen D Krasinski, James C Fleet

Open access · greenAbstract read
In one paragraph

Article in American journal of physiology. Gastrointestinal and liver physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
2.7field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Review
  3. Vitamin D and Gut Health.Advances in experimental medicine and biology · 2022
    Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Using genomics to understand intestinal biology.Journal of physiology and biochemistry · 2007
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Liyong WangInterdepartmental Nutrition Program, Purdue University, West Lafayette, Indiana 47907, USA.
Anna Klopot
Jean-Noel Freund
Lauren N Dowling
Stephen D Krasinski
James C Fleet
Harvard University Press · USPurdue University West Lafayette · USInstitut National de Recherche en Santé Publique · ML

Funding

ROLE OF VDR LEVEL IN VITAMIN D-MEDIATED CA ABSORPTIONR01DK054111 · NIDDK · UNIVERSITY OF NORTH CAROLINA GREENSBORO · PI FLEET, JAMES C. · 1997 to 2012
$3.2M
NIDDK NIH HHS DK-54111NIDDK NIH HHS R01 DK054111
6 · The paper itself

Abstract

Calbindin D9k (CaBP) is critical for intestinal calcium absorption; its in vivo expression is restricted to differentiated enterocytes of the small intestine. Our goal was to identify factors controlling the transcriptional regulation of this gene in the human intestine. Both the natural gene and a 4600-bp promoter construct were strongly regulated by differentiation (>100-fold) but not by treatment with 1,25(OH)2 vitamin D (<2-fold) in the Caco-2 clone TC7. Deletion-mutation studies revealed that conserved promoter sequences for cdx-2 (at -3158 bp) and hepatocyte nuclear factor (HNF)-1 (at -3131 and at -98 bp) combined to control CaBP expression during differentiation. Other putative response elements were not important for CaBP regulation in TC7 cells (CCAAT enhancer binding protein, pancreatic duodenal homebox-1 (pdx-1), a proximal cdx-2 element). Mutation of the distal HNF-1 site had the greatest impact on CaBP gene expression through disruption of HNF-1alpha binding; both basal and differentiation-mediated CaBP expression was reduced by 80%. In contrast, mutation of the distal cdx-2 element reduced only basal CaBP expression. Whereas a 60% reduction of CaBP mRNA in the duodenum of HNF-1alpha null mice confirmed the physiological importance of HNF-1alpha for CaBP gene regulation, additional studies showed that maximal CaBP expression requires the presence of both HNF-1alpha and cdx-2. Our data suggest that cdx-2 is a permissive factor that influences basal CaBP expression in enterocytes and that HNF-1alpha modulates CaBP gene expression during cellular differentiation.

Indexed as

AnimalsCaco-2 CellsCalbindinsCDX2 Transcription FactorCell DifferentiationClone CellsConserved SequenceDNA-Binding ProteinsElectrophoresisGene ExpressionGene Expression RegulationHepatocyte Nuclear Factor 1Hepatocyte Nuclear Factor 1-alphaHomeodomain ProteinsHumansIntestines1,25-dihydroxyvitamin DCalbindinsCDX2 Transcription FactorDNA-Binding ProteinsHepatocyte Nuclear Factor 1Hepatocyte Nuclear Factor 1-alphaHNF1A protein, humanHnf1a protein, mouseHomeodomain ProteinsNuclear ProteinsS100 Calcium Binding Protein GS100G protein, humanS100g protein, mouseTrans-ActivatorsTranscription FactorsVitamin D

Identifiers

PMID15217781
PMCPMC2701355
OpenAlexW2121602794

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.