ArticleNucleic acids research2004
iMOT: an interactive package for the selection of spatially interacting motifs.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.
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6 citing papers in PubMed.
- DOCKSCORE: a webserver for ranking protein-protein docked poses.BMC bioinformatics · 2015Article
- Structural attributes for the recognition of weak and anomalous regions in coiled-coils of myosins and other motor proteins.BMC research notes · 2012Article
- Computational Biology and Bioinformatics: a tinge of Indian spice.Bioinformation · 2006Article
- iMOTdb--a comprehensive collection of spatially interacting motifs in proteins.Nucleic acids research · 2006Article
- DIAL: a web-based server for the automatic identification of structural domains in proteins.Nucleic acids research · 2005Article
- GenDiS: Genomic Distribution of protein structural domain Superfamilies.Nucleic acids research · 2005Article
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4 authors.
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Abstract
Functional selection and three-dimensional structural constraints of proteins relate to the retention of significant sequence similarity between proteins of similar fold and function despite poor overall sequence identity and evolutionary pressures. We report the availability of 'iMOT' (interacting MOTif) server, an interactive package for the automatic identification of spatially interacting motifs among distantly related proteins sharing similar folds and possessing common ancestral lineage. Spatial interactions between conserved stretches of a protein are evaluated by calculations of pseudo-potentials that describe the strength of interactions. Such an evaluation permits the automatic identification of highly interacting conserved regions of a protein. Interacting motifs have been shown to be useful in searching for distant homologues and establishing remote homologies among the largely unassigned sequences in genome databases. Information on such motifs should also be of value in protein folding, modelling and engineering experiments. The iMOT server can be accessed from http://www.ncbs.res.in/~faculty/mini/imot/iMOTserver.html. Supplementary Material can be accessed from: http://www.ncbs.res.in/~faculty/mini/imot/supplementary.html.
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