ArticleNucleic acids research2004
LOCnet and LOCtarget: sub-cellular localization for structural genomics targets.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed.
- Protein interaction network of alternatively spliced NudCD1 isoforms.Scientific reports · 2017Article
- Human Protein Subcellular Localization with Integrated Source and Multi-label Ensemble Classifier.Scientific reports · 2016Article
- PredPlantPTS1: A Web Server for the Prediction of Plant Peroxisomal Proteins.Frontiers in plant science · 2012Article
- On the pH-optimum of activity and stability of proteins.Proteins · 2010Article
- CoBaltDB: Complete bacterial and archaeal orfeomes subcellular localization database and associated resources.BMC microbiology · 2010Article
- Identification and functional characterization of cytoplasmic determinants of plasmid DNA nuclear import.The Journal of biological chemistry · 2009Article
- Fatty acid acylation regulates trafficking of the unusual Plasmodium falciparum calpain to the nucleolus.Molecular microbiology · 2009Article
- Article
- The WUS homeobox-containing (WOX) protein family.Genome biology · 2009Review
- ESLpred2: improved method for predicting subcellular localization of eukaryotic proteins.BMC bioinformatics · 2008Article
- DBMLoc: a Database of proteins with multiple subcellular localizations.BMC bioinformatics · 2008Article
- The continuing conundrum of the LEA proteins.Die Naturwissenschaften · 2007Review
- eSLDB: eukaryotic subcellular localization database.Nucleic acids research · 2007Article
- Mutations of the Yku80 C terminus and Xrs2 FHA domain specifically block yeast nonhomologous end joining.Molecular and cellular biology · 2005Article
- LOCSVMPSI: a web server for subcellular localization of eukaryotic proteins using SVM and profile of PSI-BLAST.Nucleic acids research · 2005Article
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Authors and funding
2 authors.
Funding
Abstract
LOCtarget is a web server and database that predicts and annotates sub-cellular localization for structural genomics targets; LOCnet is one of the methods used in LOCtarget that can predict sub-cellular localization for all eukaryotic and prokaryotic proteins. Targets are taken from the central registration database for structural genomics, namely, TargetDB. LOCtarget predicts localization through a combination of four different methods: known nuclear localization signals (PredictNLS), homology-based transfer of experimental annotations (LOChom), inference through automatic text analysis of SWISS-PROT keywords (LOCkey) and de novo prediction through a system of neural networks (LOCnet). Additionally, we report predictions from SignalP. The final prediction is based on the method with the highest confidence. The web server can be used to predict sub-cellular localization of proteins from their amino acid sequence. The LOCtarget database currently contains localization predictions for all eukaryotic proteins from TargetDB and is updated every week. The server is available at http://www.rostlab.org/services/LOCtarget/.
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