ArticleNucleic acids research2004
CysView: protein classification based on cysteine pairing patterns.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed.
- Article
- Article
- Association of putative members to family of mosquito odorant binding proteins: scoring scheme using fuzzy functional templates and cys residue positions.Bioinformatics and biology insights · 2013Article
- Protein disulfide topology determination through the fusion of mass spectrometric analysis and sequence-based prediction using Dempster-Shafer theory.BMC bioinformatics · 2013Article
- Article
- Scorpion toxins specific for potassium (K+) channels: a historical overview of peptide bioengineering.Toxins · 2012Review
- CMD: A Database to Store the Bonding States of Cysteine Motifs with Secondary Structures.Advances in bioinformatics · 2012Article
- Article
- Amino acid patterns around disulfide bonds.International journal of molecular sciences · 2010Article
- Solution structure of the phytotoxic protein PcF: the first characterized member of the Phytophthora PcF toxin family.Protein science : a publication of the Protein Society · 2009Article
- ClanTox: a classifier of short animal toxins.Nucleic acids research · 2009Article
- DISULFIND: a disulfide bonding state and cysteine connectivity prediction server.Nucleic acids research · 2006Article
- HCA and HML isolated from the red marine algae Hypnea cervicornis and Hypnea musciformis define a novel lectin family.Protein science : a publication of the Protein Society · 2005Article
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Authors and funding
8 authors.
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Abstract
CysView is a web-based application tool that identifies and classifies proteins according to their disulfide connectivity patterns. It accepts a dataset of annotated protein sequences in various formats and returns a graphical representation of cysteine pairing patterns. CysView displays cysteine patterns for those records in the data with disulfide annotations. It allows the viewing of records grouped by connectivity patterns. CysView's utility as an analysis tool was demonstrated by the rapid and correct classification of scorpion toxin entries from GenPept on the basis of their disulfide pairing patterns. It has proved useful for rapid detection of irrelevant and partial records, or those with incomplete annotations. CysView can be used to support distant homology between proteins. CysView is publicly available at http://research.i2r.a-star.edu.sg/CysView/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.