Evidence map›Paper›PMID 15215403›Full record

ArticleNucleic acids research2004

The PredictProtein server.

Burkhard Rost, Guy Yachdav, Jinfeng Liu

Abstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 621 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
621citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

621 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Genomic Insights into Cobweb Disease Resistance inJournal of fungi (Basel, Switzerland) · 2025
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  7. Ejectosome ofPNAS nexus · 2024
    Article
  8. Article
  9. Article
  10. Article
  11. Toxics · 2023
    Article
  12. Article
  13. Article
  14. Effect ofBiology · 2023
    Article
  15. Article
  16. Article
  17. Pathogens (Basel, Switzerland) · 2022
    Article
  18. Article
  19. Article
  20. Article

561 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Burkhard RostCUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA. rost@columbia.edu
Guy Yachdav
Jinfeng Liu

Funding

Predictions of structure/function by PredictProteinR01LM007329 · NLM · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI PE'ER, ITSHACK G · 2003 to 2010
$2.6M
NLM NIH HHS R01 LM007329
6 · The paper itself

Abstract

PredictProtein (http://www.predictprotein.org) is an Internet service for sequence analysis and the prediction of protein structure and function. Users submit protein sequences or alignments; PredictProtein returns multiple sequence alignments, PROSITE sequence motifs, low-complexity regions (SEG), nuclear localization signals, regions lacking regular structure (NORS) and predictions of secondary structure, solvent accessibility, globular regions, transmembrane helices, coiled-coil regions, structural switch regions, disulfide-bonds, sub-cellular localization and functional annotations. Upon request fold recognition by prediction-based threading, CHOP domain assignments, predictions of transmembrane strands and inter-residue contacts are also available. For all services, users can submit their query either by electronic mail or interactively via the World Wide Web.

Indexed as

Sequence Analysis, ProteinSoftwareInternetProtein ConformationProteinsProtein Structure, TertiarySequence AlignmentUser-Computer InterfaceProteins

Identifiers

PMID15215403
PMCPMC441515

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.