ArticleNucleic acids research2004
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
7 citing papers in PubMed, 12 citations in OpenAlex.
- ESTPiper--a web-based analysis pipeline for expressed sequence tags.BMC genomics · 2009Article
- Genomic structure and expression of Jmjd6 and evolutionary analysis in the context of related JmjC domain containing proteins.BMC genomics · 2008Article
- Repeats and EST analysis for new organisms.BMC genomics · 2008Article
- MapToGenome: a comparative genomic tool that aligns transcript maps to sequenced genomes.Evolutionary bioinformatics online · 2007Article
- XML schemas for common bioinformatic data types and their application in workflow systems.BMC bioinformatics · 2006Article
- Article
- EST-BASED ANALYSIS OF GENE EXPRESSION IN THE HUMAN COCHLEA.Workshops & poster abstracts : [proceedings]. IEEE Computational Systems Bioinformatics Conference · 2005Article
Corrections and comments
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Authors and funding
4 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
e2g is a web-based server which efficiently maps large expressed sequence tag (EST) and cDNA datasets to genomic DNA. It significantly extends the volume of data that can be mapped in reasonable time, and makes this improved efficiency available as a web service. Our server hosts large collections of EST sequences (e.g. 4.1 million mouse ESTs of 1.87 Gb) in precomputed indexed data structures for efficient sequence comparison. The user can upload a genomic DNA sequence of interest and rapidly compare this to the complete collection of ESTs on the server. This delivers a mapping of the ESTs on the genomic DNA. The e2g web interface provides a graphical overview of the mapping. Alignments of the mapped EST regions with parts of the genomic sequence are visualized. Zooming functions allow the user to interactively explore the results. Mapped sequences can be downloaded for further analysis. e2g is available on the Bielefeld University Bioinformatics Server at http://bibiserv.techfak.uni-bielefeld.de/e2g/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.