ArticleNucleic acids research2004
PromoSer: improvements to the algorithm, visualization and accessibility.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
12 citing papers in PubMed.
- Inferring microRNA and transcription factor regulatory networks in heterogeneous data.BMC bioinformatics · 2013Article
- Rapid identification of novel functional promoters for gene therapy.Journal of molecular medicine (Berlin, Germany) · 2012Article
- Computational discovery of miR-TF regulatory modules in human genome.Bioinformation · 2010Article
- Comparative analysis of distinct non-coding characteristics potentially contributing to the divergence of human tissue-specific genes.Genetica · 2009Article
- Modulation of gene expression in U251 glioblastoma cells by binding of mutant p53 R273H to intronic and intergenic sequences.Nucleic acids research · 2009Article
- Promoter analysis: gene regulatory motif identification with A-GLAM.Methods in molecular biology (Clifton, N.J.) · 2009Article
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project.Nature · 2007Article
- Transcription factor binding and modified histones in human bidirectional promoters.Genome research · 2007Article
- Involvement of HTLV-I Tax and CREB in aneuploidy: a bioinformatics approach.Retrovirology · 2006Article
- CRSD: a comprehensive web server for composite regulatory signature discovery.Nucleic acids research · 2006Article
- Genome-wide promoter extraction and analysis in human, mouse, and rat.Genome biology · 2005Article
- Computational method for discovery of estrogen responsive genes.Nucleic acids research · 2004Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
2 authors.
Funding
Abstract
PromoSer is a web service that provides an easy and efficient approach to the batch retrieval of a large number of proximal promoters. Since its introduction last year, it has undergone continued development and expansion. At the core, there have been improvements in the filtering of the raw mRNA/EST sequences upon which all predictions are built, improvements in the alignments clustering and transcription start site prediction algorithms, and improvements in the backing database for increased performance. At the user interface level, improvements include enhanced functionality and user options, better integration with other resources on the web and a new visualization tool. PromoSer now also supports queries using a SOAP-based interface and XML-based responses. The service is publicly available at http://biowulf.bu.edu/zlab/PromoSer.
Indexed as
Identifiers
What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.