ArticleNucleic acids research2004
ILM: a web server for predicting RNA secondary structures with pseudoknots.
Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
12 citing papers in PubMed.
- A Hitchhiker's guide to RNA-RNA structure and interaction prediction tools.Briefings in bioinformatics · 2023Review
- Crumple: a method for complete enumeration of all possible pseudoknot-free RNA secondary structures.PloS one · 2012Article
- RNAspace.org: An integrated environment for the prediction, annotation, and analysis of ncRNA.RNA (New York, N.Y.) · 2011Article
- The human HDV-like CPEB3 ribozyme is intrinsically fast-reacting.Biochemistry · 2010Article
- Fine-tuning structural RNA alignments in the twilight zone.BMC bioinformatics · 2010Article
- Advances in RNA structure prediction from sequence: new tools for generating hypotheses about viral RNA structure-function relationships.Journal of virology · 2009Review
- RNAVLab: A virtual laboratory for studying RNA secondary structures based on grid computing technology.Parallel computing · 2008Article
- Mechanistic characterization of the HDV genomic ribozyme: the cleavage site base pair plays a structural role in facilitating catalysis.RNA (New York, N.Y.) · 2008Article
- Computational methods in noncoding RNA research.Journal of mathematical biology · 2008Review
- A distinct group of hepacivirus/pestivirus-like internal ribosomal entry sites in members of diverse picornavirus genera: evidence for modular exchange of functional noncoding RNA elements by recombination.Journal of virology · 2007Article
- RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.RNA (New York, N.Y.) · 2006Article
- Kinefold web server for RNA/DNA folding path and structure prediction including pseudoknots and knots.Nucleic acids research · 2005Article
Corrections and comments
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Authors and funding
3 authors.
Funding
Abstract
The ILM web server provides a web interface to two algorithms, iterated loop matching and maximum weighted matching, for efficiently predicting RNA secondary structures with pseudoknots. The algorithms can utilize either thermodynamic or comparative information or both, and thus can work on both aligned and individual sequences. Predicted secondary structures are presented in several formats compatible with a variety of existing visualization tools. The service can be accessed at http://cic.cs.wustl.edu/RNA/.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.