Evidence map›Paper›PMID 15215113›Full record

ArticleAntimicrobial agents and chemotherapy2004

Panel of Bacillus subtilis reporter strains indicative of various modes of action.

Bernd Hutter, Christina Fischer, Alexander Jacobi, Christoph Schaab, Hannes Loferer

Abstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed.

  1. Article
  2. The Spermidine Synthase Gene as a Reporter of Transcription Inhibition inInternational journal of molecular sciences · 2026
    Article
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  5. Contribution of theMicrobiology spectrum · 2026
    Article
  6. Article
  7. Identification of four novelInternational journal of systematic and evolutionary microbiology · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Review
  13. Overview on Strategies and Assays for Antibiotic Discovery.Pharmaceuticals (Basel, Switzerland) · 2022
    Review
  14. Droplet Microfluidics for Microbial Biotechnology.Advances in biochemical engineering/biotechnology · 2022
    Article
  15. Article
  16. Article
  17. Influence of the ABC Transporter YtrBCDEF ofFrontiers in microbiology · 2021
    Article
  18. Article
  19. Article
  20. A How-To Guide for Mode of Action Analysis of Antimicrobial Peptides.Frontiers in cellular and infection microbiology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Bernd HutterGPC Biotech AG, Fraunhoferstrasse 20, 82152 Martinsried/Munich, Germany. bernd.hutter@gpc-biotech.com
Christina Fischer
Alexander Jacobi
Christoph Schaab
Hannes Loferer

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In a recent project, we collected the transcriptional profiles of Bacillus subtilis 168 after treatment with a large set of diverse antibacterial agents. One result of the data analysis was the identification of marker genes that are indicative of certain compounds or compound classes. We cloned these promoter regions in front of a luciferase reporter gene and reintroduced the constructs individually into the B. subtilis chromosome. Strains were analyzed for their responsiveness after treatment with a set of 37 antibacterials. Twelve functional reporter strains were generated that were selectively and significantly upregulated by the compounds. The selectivity of the reporter strains ranged from generic pathways like protein biosynthesis, cell wall biosynthesis, and fatty acid biosynthesis to compound classes (quinolones and glycopeptides) and individual compounds (rifampin, cycloserine, and clindamycin). Five of the strains are amenable for high-throughput applications, e.g., pathway-specific screening. In summary, we successfully generated B. subtilis reporter strains that are indicative of the mechanisms of action of various classes of antibacterials. The set of reporter strains presented herein can be used for mode-of-action analyses and for whole-cell screening of compound libraries in a mode-of-action-specific manner.

Indexed as

Anti-Infective AgentsBacillus subtilisDNA PrimersDrug Evaluation, PreclinicalFatty AcidsGene Expression Regulation, BacterialGenes, BacterialGenes, ReporterGenetic MarkersKineticsPlasmidsUp-RegulationAnti-Infective AgentsDNA PrimersFatty AcidsGenetic Markers

Identifiers

PMID15215113
PMCPMC434206

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.