ArticlePlant physiology2004
Genome-wide ORFeome cloning and analysis of Arabidopsis transcription factor genes.
Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.
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96 citing papers in PubMed, 243 citations in OpenAlex.
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- Improving Drought Stress Tolerance in Ramie (Frontiers in plant science · 2022Review
- Genomic analysis of SBP gene family in Saccharum spontaneum reveals their association with vegetative and reproductive development.BMC genomics · 2021Article
- Genome-wide identification and comprehensive analysis of the NAC transcription factor family in sunflower during salt and drought stress.Scientific reports · 2021Article
- The BBX gene family in Moso bamboo (Phyllostachys edulis): identification, characterization and expression profiles.BMC genomics · 2021Article
- Low Light/Darkness as Stressors of Multifactor-Induced Senescence in Rice Plants.International journal of molecular sciences · 2021Review
- Genome-Wide Identification of theFrontiers in plant science · 2021Article
- Regulation of MYB Transcription Factors of Anthocyanin Synthesis in Lily Flowers.Frontiers in plant science · 2021Article
36 more citing papers are in PubMed but not listed here.
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Authors and funding
32 authors at 9 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Here, we report our effort in generating an ORFeome collection for the Arabidopsis transcription factor (TF) genes. In total, ORFeome clones representing 1,282 Arabidopsis TF genes have been obtained in the Gateway high throughput cloning pENTR vector, including 411 genes whose annotation lack cDNA support. All the ORFeome inserts have also been mobilized into a yeast expression destination vector, with an estimated 85% rate of expressing the respective proteins. Sequence analysis of these clones revealed that 34 of them did not match with either the reported cDNAs or current predicted open-reading-frame sequences. Among those, novel alternative splicing of TF gene transcripts is responsible for the observed differences in at least five genes. However, those alternative splicing events do not appear to be differentially regulated among distinct Arabidopsis tissues examined. Lastly, expression of those TF genes in 17 distinct Arabidopsis organ types and the cultured cells was profiled using a 70-mer oligo microarray.
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