Evidence map›Paper›PMID 15198975›Full record

ArticleGenes & development2004

Mouse limb deformity mutations disrupt a global control region within the large regulatory landscape required for Gremlin expression.

Aimée Zuniga, Odyssé Michos, François Spitz, Anna-Pavlina G Haramis, Lia Panman, Antonella Galli, Kristina Vintersten, Christian Klasen, William Mansfield, Sylwia Kuc and 3 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 60 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
60citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

60 citing papers in PubMed, 1 synthesis or guideline pooled it, 142 citations in OpenAlex.

  1. Pooled it
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  17. Article
  18. Deletion of a Long-RangeGenetics · 2018
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 4 countries.

Aimée ZunigaDevelopmental Genetics, Department of Clinical-Biological Sciences, University of Basel Medical School, CH-4056 Basel, Switzerland.
Odyssé Michos
François Spitz
Anna-Pavlina G Haramis
Lia Panman
Antonella Galli
Kristina Vintersten
Christian Klasen
William Mansfield
Sylwia Kuc
Denis Duboule
Rosanna Dono
Rolf Zeller
University of Basel · CHEuropean Molecular Biology Laboratory · DEUniversity of Geneva · CHUtrecht University · NL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mouse limb deformity (ld) mutations cause limb malformations by disrupting epithelial-mesenchymal signaling between the polarizing region and the apical ectodermal ridge. Formin was proposed as the relevant gene because three of the five ld alleles disrupt its C-terminal domain. In contrast, our studies establish that the two other ld alleles directly disrupt the neighboring Gremlin gene, corroborating the requirement of this BMP antagonist for limb morphogenesis. Further doubts concerning an involvement of Formin in the ld limb phenotype are cast, as a targeted mutation removing the C-terminal Formin domain by frame shift does not affect embryogenesis. In contrast, the deletion of the corresponding genomic region reproduces the ld limb phenotype and is allelic to mutations in Gremlin. We resolve these conflicting results by identifying a cis-regulatory region within the deletion that is required for Gremlin activation in the limb bud mesenchyme. This distant cis-regulatory region within Formin is also altered by three of the ld mutations. Therefore, the ld limb bud patterning defects are not caused by disruption of Formin, but by alteration of a global control region (GCR) required for Gremlin transcription. Our studies reveal the large genomic landscape harboring this GCR, which is required for tissue-specific coexpression of two structurally and functionally unrelated genes.

Indexed as

Gene Expression Regulation, DevelopmentalMutationRegulatory Sequences, Nucleic AcidAmino Acid SequenceAnimalsBase SequenceCytokinesFetal ProteinsForminsHedgehog ProteinsIntercellular Signaling Peptides and ProteinsLimb BudsLimb Deformities, CongenitalMesodermMiceMicrofilament ProteinsCytokinesFetal ProteinsForminsGrem1 protein, mouseHedgehog ProteinsIntercellular Signaling Peptides and ProteinsMicrofilament ProteinsNuclear ProteinsShh protein, mouseTrans-Activators

Identifiers

PMID15198975
PMCPMC443518
OpenAlexW2110141112

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.