Evidence map›Paper›PMID 15190182›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Detailed analysis of gene expression during development of T cell lineages in the thymus.

Nami McCarty, Mari L Shinohara, Linrong Lu, Harvey Cantor

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. p38γ and p38δ support CD4Frontiers in immunology · 2026
    Article
  2. Review
  3. Unexpected role of clathrin adaptor AP-1 in MHC-dependent positive selection of T cells.Proceedings of the National Academy of Sciences of the United States of America · 2010
    Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Nami McCartyDepartment of Cancer Immunology and AIDS, Dana-Farber Cancer Institute, and Department of Pathology, Harvard Medical School, 44 Binney Street, Boston, MA 02115, USA.
Mari L Shinohara
Linrong Lu
Harvey Cantor

Funding

IMMUNOLOGIC MECHANISMS THAT PREVENT AUTOIMMUNITYR01AI037562 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY · 1996 to 2021
$9.4M
Postdoctoral Training Program in AIDS-related ResearchT32AI007386 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY, ENGELMAN, ALAN N. · 1990 to 2023
$5.3M
THE T-CELL RESPONSE TO ANTIGENR01AI048125 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY · 2000 to 2021
$5.1M
T CELL SUBPOPULATIONS IN TRANSPLANTATION IMMUNITYR37AI012184 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY · 1997 to 2006
$3.5M
IMMUNOBIOLOGY OF LY+ T-CELL SUBCLASSESR01AI013600 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY · 1985 to 2003
$1.5M
T-CELL SUBPOPULATIONS IN TRANSPLANTATION IMMUNITYR01AI012184 · NIAID · DANA-FARBER CANCER INSTITUTE · PI CANTOR, HARVEY · 1985 to 1996
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NIAID NIH HHS AI12184NIAID NIH HHS AI13600NIAID NIH HHS AI37562NIAID NIH HHS AI48125NIAID NIH HHS R01 AI013600NIAID NIH HHS R01 AI037562NIAID NIH HHS R01 AI048125NIAID NIH HHS R37 AI012184NIAID NIH HHS T32 AI007386NIAID NIH HHS T32 AI07386
6 · The paper itself

Abstract

The genetic mechanisms that promote lineage commitment and eliminate autoreactive cells in the thymus are not well understood. To better understand this process, we have identified and quantitated transcripts in the two major thymocyte lineages by using serial analysis of gene expression. Approximately 25 genes displayed almost complete segregation to one or the other T cell lineage. Commitment to the CD4 lineage was marked by up-regulation of genes associated with increased survival and chaperone function followed by expression of genes that regulate nucleosome remodeling and T cell receptor signaling. Differentiation within the CD8 lineage, on the other hand, was marked by up-regulation of genes that regulate lymphocyte homing, followed by quenching of genes that inhibit apoptosis. Definition of differential gene expression during development of the two major thymocyte lineages will allow insight into mechanisms of T cell development after positive and negative selection.

Indexed as

AnimalsCD4-Positive T-LymphocytesCD8-Positive T-LymphocytesCell SeparationDNA-Binding ProteinsDNA PrimersFemaleFlow CytometryGene DeletionGene Expression RegulationGene LibraryHistocompatibility Antigens Class IHistocompatibility Antigens Class IIMiceMice, Inbred C57BLMice, KnockoutDNA-Binding ProteinsDNA PrimersHistocompatibility Antigens Class IHistocompatibility Antigens Class IIRag2 protein, mouseV(D)J recombination activating protein 2

Identifiers

PMID15190182
PMCPMC438978

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.