Evidence map›Paper›PMID 15187990›Full record

ArticleBritish journal of cancer2004

Candidate target genes for loss of heterozygosity on human chromosome 17q21.

L De Marchis, C Cropp, Z M Sheng, S Bargo, R Callahan, L DeMarchis

Erratum issuedOpen access · hybridAbstract read
In one paragraph

Article in British journal of cancer, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.6field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

  • Erratum issued
    DeMarchis, L [corrected to De Marchis, L]
5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

L De MarchisMammary Biology and Tumorigenesis Laboratory, National Cancer Institute, Bethesda, MD 20892, USA.
C Cropp
Z M Sheng
S Bargo
R Callahan
L DeMarchis
National Cancer Institute · US

Funding

Mammary Tumorigenesis in Inbred and Feral MiceZIABC005148 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CALLAHAN, ROBERT · 2009 to 2015
$7.7M
MAMMARY TUMORIGENESIS IN INBRED AND FERAL MICEZ01BC005148 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI CALLAHAN, ROBERT · 1996 to 2008
$2.4M
6 · The paper itself

Abstract

Loss of heterozygosity (LOH) on chromosome 17q21 has been detected in 30% of primary human breast tumours. The smallest common region deleted occurred in an interval between the D17S746 and D17S846 polymorphic sequences tagged sites that are located on two recombinant P1-bacteriophage clones of chromosome 17q21: 122F4 and 50H1, respectively. To identify the target gene for LOH, we defined a map of this chromosomal region. We found the following genes: JUP, FK506BP10, SC65, Gastrin (GAS) and HAP1. Of the genes that have been identified in this study, only JUP is located between D17S746 and D17S846. This was of interest since earlier studies have shown that JUP expression is altered in breast, lung and thyroid tumours as well as cell lines having LOH in chromosome 17q21. However, no mutations were detected in JUP using single-strand conformation polymorphism analysis of primary breast tumour DNAs having LOH at 17q21. We could find no evidence that the transcription promoter for JUP is methylated in tumour DNAs having LOH at 17q21. We suspect that the target gene for LOH in primary human breast tumours on chromosome 17q21 is either JUP and results in a haploinsufficiency for expression or may be an unidentified gene located in the interval between D17S846 and JUP.

Indexed as

Loss of HeterozygosityBreast NeoplasmsChromosome MappingChromosomes, Human, Pair 17Cytoskeletal ProteinsDesmoplakinsDNA Mutational AnalysisFemaleHumansPolymorphism, Single-Stranded ConformationalReverse Transcriptase Polymerase Chain ReactionCytoskeletal ProteinsDesmoplakins

Identifiers

PMID15187990
PMCPMC2409524
OpenAlexW2078452075

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.