Evidence map›Paper›PMID 15187233›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Selection-subtraction approach (SSA): a universal genetic screening technique that enables negative selection.

Aatur D Singhi, Roman V Kondratov, Nickolay Neznanov, Mikhail V Chernov, Andrei V Gudkov

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.5field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genomewide gain-of-function genetic screen identifies functionally active genes in mouse embryonic stem cells.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Aatur D SinghiDepartment of Molecular Biology, Lerner Research Institute, Cleveland Clinic Foundation, Cleveland, OH 44195, USA.
Roman V Kondratov
Nickolay Neznanov
Mikhail V Chernov
Andrei V Gudkov
Cleveland Clinic · US

Funding

GENETIC ELEMENTS TRANSFORMING MOUSE FIBROBLASTSR01CA060730 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI GUDKOV, ANDREI V · 1994 to 2009
$2.6M
Diagnostic Therapeutic Targets in Prostate CancerR01CA098374 · NCI · ROSWELL PARK CANCER INSTITUTE CORP · PI GUDKOV, ANDREI V · 2003 to 2007
$1.7M
NCI NIH HHS CA098374NCI NIH HHS CA60730NCI NIH HHS R01 CA060730NCI NIH HHS R01 CA098374
6 · The paper itself

Abstract

Screening of expression libraries for bioactive clones that modulate the growth of mammalian cells has been limited largely to positive selections incapable of revealing growth suppressive or lethal genetic elements. We have developed a technique, selection-subtraction approach (SSA), that allows growth-modulating clones to be isolated based on alterations in their relative abundance in growing cell populations that have been transduced with an expression library. SSA utilizes tagged retroviral libraries in bacteriophage lambda vectors (retrophages). Nylon prints from retrophage libraries are used to determine the relative abundance of tags in library-transduced cells to identify biological activity of individual clones. Applications of SSA for gene discovery, target discovery, and generation of mutant proteins have been demonstrated, by using p53 and ataxia telangiectasia mutated (ATM) as models to isolate growth inhibitory proteins, peptides and antisense RNAs, and temperature-sensitive mutant proteins.

Indexed as

Base SequenceDatabases, Nucleic AcidGene LibraryGenetic TestingGenetic VectorsHumansMaleMolecular Sequence DataMutagenesis, Site-DirectedPolydeoxyribonucleotidesProstateProteinsRestriction MappingRNA, AntisenseSelection, GeneticPolydeoxyribonucleotidesProteinsRNA, Antisense

Identifiers

PMID15187233
PMCPMC438976
OpenAlexW2015764142

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.