Evidence map›Paper›PMID 15186491›Full record

ArticleGenome biology2004

A survey of ovary-, testis-, and soma-biased gene expression in Drosophila melanogaster adults.

Michael Parisi, Rachel Nuttall, Pamela Edwards, James Minor, Daniel Naiman, Jining Lü, Michael Doctolero, Marina Vainer, Cathy Chan, James Malley and 2 more

Open access · goldAbstract readValidation Study
In one paragraph

Article in Genome biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 178 papers.

0numbers the graph read from it
0cells of the map it votes in
178citing papers in PubMed
9.6field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

178 citing papers in PubMed, 319 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Deficiency ofInternational journal of molecular sciences · 2024
    Article
  9. Evolution of sex-biased genes inEcology and evolution · 2024
    Article
  10. Article
  11. Sex matters in preclinical research.Disease models & mechanisms · 2024
    Article
  12. Article
  13. Article
  14. Article
  15. Sex-biased gene expression in nutrient-sensing pathways.Proceedings. Biological sciences · 2023
    Article
  16. Article
  17. Stochastic Modeling of Gene Expression Evolution Uncovers Tissue- and Sex-Specific Properties of Expression Evolution in theJournal of computational biology : a journal of computational molecular cell biology · 2023
    Article
  18. Article
  19. Article
  20. Article

118 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Michael ParisiLaboratory of Cellular and Developmental Biology, National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Department of Health and Human Services, Bethesda, MD 20892, USA. michaelpa@intra.niddk.nih.gov
Rachel Nuttall
Pamela Edwards
James Minor
Daniel Naiman
Jining Lü
Michael Doctolero
Marina Vainer
Cathy Chan
James Malley
Scott Eastman
Brian Oliver
Incyte (United States) · USNational Institutes of Health · USJohns Hopkins University · USNational Institute of Diabetes and Digestive and Kidney Diseases · US

Funding

GERMLINE SEX DETERMINATIONZ01DK015600 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI OLIVER, BRIAN C · 1996 to 2008
$949k
Advanced Methods In Statistical GeneticsZ01CT000268 · CIT · COMPUTER RESEARCH AND TECHNOLOGY · PI MALLEY, JAMES D · 1999 to 2008
$354k
NIDDK NIH HHS Z01 DK015600-10
6 · The paper itself

Abstract

backgroundSexual dimorphism results in the formation of two types of individuals with specialized reproductive roles and is most evident in the germ cells and gonads.

resultsWe have undertaken a global analysis of transcription between the sexes using a 31,464 element FlyGEM microarray to determine what fraction of the genome shows sex-biased expression, what tissues express these genes, the predicted functions of these genes, and where these genes map onto the genome. Females and males (both with and without gonads), dissected testis and ovary, females and males with genetically ablated germlines, and sex-transformed flies were sampled.

conclusionsUsing any of a number of criteria, we find extensive sex-biased expression in adults. The majority of cases of sex differential gene expression are attributable to the germ cells. There is also a large class of genes with soma-biased expression. There is little germline-biased expression indicating that nearly all genes with germline expression also show sex-bias. Monte Carlo simulations show that some genes with sex-biased expression are non-randomly distributed in the genome.

Indexed as

AnimalsBlotting, NorthernDrosophila melanogasterFemaleGene Expression ProfilingGene Expression Regulation, DevelopmentalGenes, InsectMaleOligonucleotide Array Sequence AnalysisOvaryResearch DesignRNA, MessengerSex FactorsTestisRNA, Messenger

Identifiers

PMID15186491
PMCPMC463073
OpenAlexW2130198725

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.