Evidence map›Paper›PMID 15178763›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Structure of vaccinia complement protein in complex with heparin and potential implications for complement regulation.

Vannakambadi K Ganesh, Scott A Smith, Girish J Kotwal, Krishna H M Murthy

RetractedOpen access · greenAbstract readComparative StudyRetracted Publication
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 56 citations in OpenAlex.

  1. Article
  2. Article
  3. Demystifying heparan sulfate-protein interactions.Annual review of biochemistry · 2014
    Review
  4. Article
  5. Article
  6. Article
  7. Poxvirus proteomics and virus-host protein interactions.Microbiology and molecular biology reviews : MMBR · 2009
    Review
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  9. Article
  10. Article
  11. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Vannakambadi K GaneshCenter for Biophysical Science and Engineering, University of Alabama at Birmingham, Birmingham, AL 35294-4400, USA.
Scott A Smith
Girish J Kotwal
Krishna H M Murthy
University of Cape Town · ZAUniversity of Louisville · US

Funding

Study of Interactions of VCP with Complement ComponentsR01AI051615 · NIAID · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI MURTHY, KRISHNA H · 2003 to 2007
$1.5M
NIAID NIH HHS AI51615NIAID NIH HHS R01 AI051615Wellcome Trust
6 · The paper itself

Abstract

Vaccinia virus complement control protein (VCP), a homolog of the regulators of the complement activation family of proteins, inhibits complement activation through mechanisms similar to human fluid-phase complement regulators factor H and C4b-binding protein. VCP has a heparin-binding activity that assists vaccinia in host interactions. Interaction with cell-surface polyanions like heparin is centrally important in the functioning of fluid-phase complement regulators and is the basis of host-target discrimination by the alternative pathway. We report the structure of VCP in complex with a heparin decasaccharide, which reveals changes in VCP that might be pertinent to complement regulation. Properties that VCP shares with fluid-phase complement regulators suggest that such conformational changes may be of relevance in the functioning of other complement regulators. Additionally, comparison of VCP-heparin interactions with potentially similar interactions in factor H might enable understanding of the structural basis of familial hemolytic uremic syndrome, attributed to mutational disruption of heparin and C3b binding by factor H.

Indexed as

Amino Acid SequenceComplement C3bComplement Factor HCrystallography, X-RayHeparinModels, MolecularMolecular Sequence DataPeptide FragmentsProtein BindingProtein ConformationViral ProteinsCFH protein, humanComplement C3bcomplement-control protein, Vaccinia virusComplement Factor HHeparinPeptide FragmentsViral Proteins

Identifiers

PMID15178763
PMCPMC428448
OpenAlexW2022739407

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.