Evidence map›Paper›PMID 15178762›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Manipulation of light signal transduction as a means of modifying fruit nutritional quality in tomato.

Yongsheng Liu, Sherry Roof, Zhibiao Ye, Cornelius Barry, Ageeth van Tuinen, Julia Vrebalov, Chris Bowler, Jim Giovannoni

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 148 papers.

0numbers the graph read from it
0cells of the map it votes in
148citing papers in PubMed
7.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

148 citing papers in PubMed, 463 citations in OpenAlex.

  1. Article
  2. Article
  3. OptimizingPlants (Basel, Switzerland) · 2025
    Article
  4. Manipulating the Light Systemic Signal HY5 Greatly Improve Fruit Quality in Tomato.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025
    Article
  5. Molecular breeding of tomato: Advances and challenges.Journal of integrative plant biology · 2025
    Review
  6. Article
  7. Review
  8. Light-mediated activation ofFrontiers in plant science · 2025
    Article
  9. The resistance ofPhotosynthetica · 2025
    Article
  10. Article
  11. Review
  12. Article
  13. Article
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  15. Article
  16. Review
  17. Marker assisted early generation identification of root knot disease resistant orange tomato segregants with multiple desirable alleles.Physiology and molecular biology of plants : an international journal of functional plant biology · 2023
    Article
  18. HY5 functions as a systemic signal by integrating BRC1-dependent hormone signaling in tomato bud outgrowth.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  19. Article
  20. Article

88 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Yongsheng LiuBoyce Thompson Institute for Plant Research, Tower Road, Ithaca, NY 14853, USA.
Sherry Roof
Zhibiao Ye
Cornelius Barry
Ageeth van Tuinen
Julia Vrebalov
Chris Bowler
Jim Giovannoni
Cornell University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Fruit constitutes a major component of human diets, providing fiber, vitamins, and phytonutrients. Carotenoids are a major class of compounds found in many fruits, providing nutritional benefits as precursors to essential vitamins and as antioxidants. Although recent gene isolation efforts and metabolic engineering have primarily targeted genes involved in carotenoid biosynthesis, factors that regulate flux through the carotenoid pathway remain largely unknown. Characterization of the tomato high-pigment mutations (hp1 and hp2) suggests the manipulation of light signal transduction machinery may be an effective approach toward practical manipulation of plant carotenoids. We demonstrate here that hp1 alleles represent mutations in a tomato UV-DAMAGED DNA-BINDING PROTEIN 1 (DDB1) homolog. We further demonstrate that two tomato light signal transduction genes, LeHY5 and LeCOP1LIKE, are positive and negative regulators of fruit pigmentation, respectively. Down-regulated LeHY5 plants exhibit defects in light responses, including inhibited seedling photomorphogenesis, loss of thylakoid organization, and reduced carotenoid accumulation. In contrast, repression of LeCOP1LIKE expression results in plants with exaggerated photomorphogenesis, dark green leaves, and elevated fruit carotenoid levels. These results suggest genes encoding components of light signal transduction machinery also influence fruit pigmentation and represent genetic tools for manipulation of fruit quality and nutritional value.

Indexed as

LightNutritive ValueAllelesArabidopsis ProteinsBase SequenceBasic-Leucine Zipper Transcription FactorsCarotenoidsCell DeathChlorophyllChromosome MappingDNA-Binding ProteinsFruitGene Expression Regulation, PlantGenes, PlantHypocotylMolecular Sequence DataArabidopsis ProteinsBasic-Leucine Zipper Transcription FactorsCarotenoidsChlorophyllDNA-Binding ProteinsHY5 protein, ArabidopsisNuclear ProteinsPlant ProteinsRNA, Messenger

Identifiers

PMID15178762
PMCPMC470770
OpenAlexW2150245091

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.