Evidence map›Paper›PMID 15166139›Full record

ArticleGenetics2004

Genetic interactions with C-terminal domain (CTD) kinases and the CTD of RNA Pol II suggest a role for ESS1 in transcription initiation and elongation in Saccharomyces cerevisiae.

Cathy B Wilcox, Anne Rossettini, Steven D Hanes

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 43 citations in OpenAlex.

  1. Article
  2. Article
  3. Prolyl isomerases in gene transcription.Biochimica et biophysica acta · 2015
    Review
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Updating the CTD Story: From Tail to Epic.Genetics research international · 2011
    Article
  11. Article
  12. Article
  13. How eukaryotic genes are transcribed.Critical reviews in biochemistry and molecular biology · 2009
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 3 institutions in 1 country.

Cathy B WilcoxMolecular Genetics Program, Wadsworth Center, New York State Department of Health, Albany, New York 12208, USA.
Anne Rossettini
Steven D Hanes
New York State Department of Health · USUniversity at Albany, State University of New York · USWadsworth Center · US

Funding

Yeast Ess1, a Conserved PPlase Essential for MitosisR01GM055108 · NIGMS · WADSWORTH CENTER · PI HANES, STEVEN D. · 1997 to 2010
$2.5M
NIGMS NIH HHS R01-GM55108
6 · The paper itself

Abstract

Ess1 is an essential prolyl isomerase that binds the C-terminal domain (CTD) of Rpb1, the large subunit of RNA polymerase II. Ess1 is proposed to control transcription by isomerizing phospho-Ser-Pro peptide bonds within the CTD repeat. To determine which step(s) in the transcription cycle might require Ess1, we examined genetic interactions between ESS1 and genes encoding the known CTD kinases (KIN28, CTK1, BUR1, and SRB10). Although genetic interactions were identified between ESS1 and all four kinases, the clearest interactions were with CTK1 and SRB10. Reduced dosage of CTK1 rescued the growth defect of ess1(ts) mutants, while overexpression of CTK1 enhanced the growth defects of ess1(ts) mutants. Deletion of SRB10 suppressed ess1(ts) and ess1Delta mutants. The interactions suggest that Ess1 opposes the functions of these kinases, which are thought to function in preinitiation and elongation. Using a series of CTD substitution alleles, we also identified Ser5-Pro6 as a potential target for Ess1 isomerization within the first "half" of the CTD repeats. On the basis of the results, we suggest a model in which Ess1-directed conformational changes promote dephosphorylation of Ser5 to stimulate preinitiation complex formation and, later, to inhibit elongation.

Indexed as

AlanineAllelesCell ProliferationDiploidyGene DeletionGenotypeMutationNIMA-Interacting Peptidylprolyl IsomerasePeptidesPeptidylprolyl IsomerasePlasmidsProtein BindingProtein ConformationProtein Structure, TertiaryRNA Polymerase IISaccharomyces cerevisiaeAlanineESS1 protein, S cerevisiaeNIMA-Interacting Peptidylprolyl IsomerasePeptidesPeptidylprolyl IsomeraseRNA Polymerase IISaccharomyces cerevisiae ProteinsSerine

Identifiers

PMID15166139
PMCPMC1470855
OpenAlexW2150166153

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.