Evidence map›Paper›PMID 15163704›Full record

ArticleJournal of virology2004

Characterization of the polymerase and RNase H activities of human foamy virus reverse transcriptase.

Paul L Boyer, Carolyn R Stenbak, Patrick K Clark, Maxine L Linial, Stephen H Hughes

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
0.8field-weighted citation impact, top 32% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 31 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 4 institutions in 1 country.

Paul L BoyerHIV Drug Resistance Program, National Cancer Institute-FCRDC, P.O. Box B, Building 539, Room 130A, Frederick, MD 21702-1201, USA.
Carolyn R Stenbak
Patrick K Clark
Maxine L Linial
Stephen H Hughes
Fred Hutch Cancer Center · USFrederick National Laboratory for Cancer Research · USScience Applications International Corporation (United States) · USUniversity of Washington · US

Funding

VIRAL CODED FUNCTIONS IN ROUS SARCOMA VIRUSR01CA018282 · NCI · FRED HUTCHINSON CANCER RESEARCH CENTER · PI LINIAL, MAXINE L · 1985 to 2011
$5.0M
VIRAL ONCOLOGYT32CA009229 · NCI · UNIVERSITY OF WASHINGTON · PI LINIAL, MAXINE L · 1985 to 2007
$3.0M
Structure and Function of HIV-1 Reverse TranscriptaseZ01BC010481 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI HUGHES, STEPHEN H · 2003 to 2008
$2.0M
NCI NIH HHS CA 09229NCI NIH HHS CA 18282NCI NIH HHS R01 CA018282NCI NIH HHS T32 CA009229
6 · The paper itself

Abstract

Foamy virus (FV) replication, while related to that of orthoretroviruses, differs at a number of steps. Several of these differences involve the reverse transcriptase (RT). There appear to be fewer RTs present in FV than in orthoretroviruses; we previously proposed that the polymerase of FV RT was more active than orthoretroviral RTs to compensate for the numerical difference. Here we present further characterization of the RT of FV. The polymerase activity of FV RT was greater than that of human immunodeficiency virus type 1 RT in a variety of assays. We also examined the RNase H activity of FV RT, and we propose that FV RT has a basic loop in the RNase H domain. Although the sequence of the basic loop of FV RT is different from the basic loop of either Moloney leukemia virus RNase H or Escherichia coli RNase H, the FV RT basic loop appears to have a similar function.

Indexed as

Ribonuclease HRNA-Directed DNA PolymeraseAmino Acid SequenceBase SequenceDiphosphatesDNA PrimersDNA, ViralHIV Reverse TranscriptaseMolecular Sequence DataRNA, ViralSpumavirusTemplates, GeneticDiphosphatesDNA PrimersDNA, ViralHIV Reverse TranscriptaseRibonuclease HRNA-Directed DNA PolymeraseRNA, Viral

Identifiers

PMID15163704
PMCPMC416499
OpenAlexW2153627825

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.