Evidence map›Paper›PMID 15163346›Full record

ArticleBMC biology2004

Evidence for interplay among yeast replicative DNA polymerases alpha, delta and epsilon from studies of exonuclease and polymerase active site mutations.

Youri I Pavlov, Satoko Maki, Hisaji Maki, Thomas A Kunkel

Erratum issuedAbstract read
In one paragraph

Article in BMC biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed.

  1. Article
  2. Article
  3. DNA polymerase δ proofreads errors made by DNA polymerase ε.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  4. Article
  5. Identification of aViruses · 2018
    Article
  6. Article
  7. Interactions of theOpen biology · 2017
    Article
  8. Article
  9. Review
  10. Article
  11. Geminivirus protein structure and function.Molecular plant pathology · 2013
    Review
  12. Article
  13. Review
  14. Review
  15. Antimutator variants of DNA polymerases.Critical reviews in biochemistry and molecular biology · 2011
    Review
  16. Article
  17. Article
  18. Article
  19. DNA replication fidelity and cancer.Seminars in cancer biology · 2010
    Review
  20. Review
4 · The record

Corrections and comments

  • Erratum issued
5 · Who and what money

Authors and funding

4 authors.

Youri I PavlovLaboratory of Molecular Genetics, National Institute of Environmental Health Sciences, National Institute of Health, DHHS, Research Triangle Park, NC 27709, USA. ypavlov@unmc.edu
Satoko Maki
Hisaji Maki
Thomas A Kunkel

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDNA polymerase epsilon (Pol epsilon) is essential for S-phase replication, DNA damage repair and checkpoint control in yeast. A pol2-Y831A mutation leading to a tyrosine to alanine change in the Pol epsilon active site does not cause growth defects and confers a mutator phenotype that is normally subtle but strong in a mismatch repair-deficient strain. Here we investigate the mechanism responsible for the mutator effect.

resultsPurified four-subunit Y831A Pol epsilon turns over more deoxynucleoside triphosphates to deoxynucleoside monophosphates than does wild-type Pol epsilon, suggesting altered coordination between the polymerase and exonuclease active sites. The pol2-Y831A mutation suppresses the mutator effect of the pol2-4 mutation in the exonuclease active site that abolishes proofreading by Pol epsilon, as measured in haploid strain with the pol2-Y831A,4 double mutation. Analysis of mutation rates in diploid strains reveals that the pol2-Y831A allele is recessive to pol2-4. In addition, the mutation rates of strains with the pol2-4 mutation in combination with active site mutator mutations in Pol delta and Pol alpha suggest that Pol epsilon may proofread certain errors made by Pol alpha and Pol delta during replication in vivo.

conclusionsOur data suggest that Y831A replacement in Pol epsilon reduces replication fidelity and its participation in chromosomal replication, but without eliminating an additional function that is essential for viability. This suggests that other polymerases can substitute for certain functions of polymerase epsilon.

Indexed as

Binding SitesCell SurvivalDNA Polymerase IDNA Polymerase IIDNA Polymerase IIIExonucleasesModels, GeneticPoint MutationSaccharomyces cerevisiaeDNA Polymerase IDNA Polymerase IIDNA Polymerase IIIExonucleases

Identifiers

PMID15163346
PMCPMC434536

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.