Evidence map›Paper›PMID 15159641›Full record

ArticlePlant molecular biology2004

Cloning and functional analyses of a gene from sugar beet up-regulated upon cyst nematode infection.

Suren Samuelian, Michael Kleine, Carolien P Ruyter-Spira, René M Klein-Lankhorst, Christian Jung

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Plant molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Rapid and Visual Detection ofInternational journal of molecular sciences · 2021
    Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Construction of a potato transcriptome map based on the cDNA-AFLP technique.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008
    Article
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Suren SamuelianPlant Breeding Institute, Christian-Albrechts-University of Kiel, Olshausenstrasse 40, 24098 Kiel, Germany.
Michael Kleine
Carolien P Ruyter-Spira
René M Klein-Lankhorst
Christian Jung
Centre for BioSystems Genomics · NLKiel University · DEClinical Research Center Kiel · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cDNA-AFLP technique was used to isolate sugar beet genes up-regulated upon infection with the beet cyst nematode Heterodera schachtii. Hairy root cultures were obtained from resistant plants carrying a Beta procumbens translocation as well as from a non-resistant control. mRNA was isolated from hairy root clones and sugar beet plants infected or not with the beet cyst nematode and 8000 transcript-derived fragments (TDFs) were analysed. One TDF was found to be differentially expressed in both materials and was further investigated. Real-time PCR confirmed that this TDF is specifically up-regulated in resistant sugar beet upon nematode infection and its full-length cDNA was isolated. Sequence analysis suggests that the gene encodes a 317 amino acid polypeptide of unknown function. No homology to any sequence present in the public databases could be detected. To further elucidate its function in resistance to the beet cyst nematode, the cDNA was transformed into hairy roots of susceptible sugar beet under the control of the 35S promoter and hairy root clones were inoculated with nematodes. The number of developing females was significantly reduced in 12 out of 15 clones resulting from independent transgenic events suggesting that the gene can be used for inducing cyst nematode resistance in plants.

Indexed as

AnimalsBeta vulgarisCloning, MolecularDNA, ComplementaryFemaleGene Expression ProfilingGene Expression Regulation, PlantGenetic Complementation TestImmunity, InnateMolecular Sequence DataNucleic Acid Amplification TechniquesPlant DiseasesPlant ProteinsPlant RootsPlants, Genetically ModifiedSequence Analysis, DNADNA, ComplementaryPlant Proteins

Identifiers

PMID15159641
OpenAlexW2044993495

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.