Evidence map›Paper›PMID 15155201›Full record

ArticleAntimicrobial agents and chemotherapy2004

Genetic environments of the rmtA gene in Pseudomonas aeruginosa clinical isolates.

Kunikazu Yamane, Yohei Doi, Keiko Yokoyama, Tetsuya Yagi, Hiroshi Kurokawa, Naohiro Shibata, Keigo Shibayama, Haru Kato, Yoshichika Arakawa

Open access · greenAbstract read
In one paragraph

Article in Antimicrobial agents and chemotherapy, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.3field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Antimicrobial Resistance and Transconjugants Characteristics ofAnimals : an open access journal from MDPI · 2022
    Article
  6. Review
  7. Emergence of antibiotic resistanceGenes & diseases · 2019
    Review
  8. How to manageDrugs in context · 2018
    Review
  9. Review
  10. Molecular epidemiology of aminoglycosides resistance on Klebsiella pneumonia in a hospital in China.International journal of clinical and experimental medicine · 2015
    Article
  11. Pseudomonas aeruginosa: resistance to the max.Frontiers in microbiology · 2011
    Article
  12. Article
  13. Review
  14. Abstracts of the 19th ECCMID (European Congress of Clinical Microbiology and Infectious Diseases). Helsinki, Finland. May 16-19, 2009.Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases · 2009
    Article
  15. Article
  16. Genetic environment of 16S rRNA methylase gene rmtD.Antimicrobial agents and chemotherapy · 2008
    Article
  17. RmtC 16S rRNA methyltransferase in Australia.Antimicrobial agents and chemotherapy · 2008
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Kunikazu YamaneDepartment of Bacterial Pathogenesis and Infection Control, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashi-Murayama, Tokyo 208-0011, Japan.
Yohei Doi
Keiko Yokoyama
Tetsuya Yagi
Hiroshi Kurokawa
Naohiro Shibata
Keigo Shibayama
Haru Kato
Yoshichika Arakawa
National Institute of Infectious Diseases · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nine Pseudomonas aeruginosa strains showing very high levels of resistance to various aminoglycosides have been isolated from clinical specimens in seven separate Japanese hospitals in five prefectures since 1997. These strains harbor the newly identified 16S rRNA methylase gene (rmtA). When an rmtA gene probe was hybridized with genomic DNAs of the nine strains digested with EcoRI, two distinct patterns were observed. The 11.1- and 15.8-kb regions containing the rmtA genes of strains AR-2 and AR-11, respectively, were sequenced and compared. In strain AR-2, a transposase gene-like sequence (sequence 1) and a probable tRNA ribosyltransferase gene (orfA) were located upstream of rmtA, and a Na(+)/H(+) antiporter gene-like sequence (sequence 2) was identified downstream of rmtA. This 6.2-kbp insert (the rmtA locus) was flanked by 262-bp kappagamma elements. Part of the orfQ gene adjacent to an inverted repeat was found outside of the rmtA locus. In strain AR-11, the rmtA gene and sequence 2 were found, but the 5' end of the orfA gene was truncated and replaced with IS6100. An orfQ-orfI region was present on each side of the rmtA gene in strain AR-11. The G+C content of the rmtA gene was about 55%, and since the newly identified rmtA gene may well be mediated by some mobile genetic elements such as Tn5041, further dissemination of the rmtA gene could become an actual clinical problem in the near future.

Indexed as

Anti-Bacterial AgentsBlotting, SouthernCloning, MolecularDNA, BacterialDNA FingerprintingElectrophoresis, Gel, Pulsed-FieldGenes, BacterialJapanMethyltransferasesMicrobial Sensitivity TestsMolecular Sequence DataPseudomonas aeruginosaPseudomonas InfectionsRNA, Ribosomal, 16S16S rRNA (adenine(1518)-N(6)-adenine(1519)-N(6))-dimethyltransferaseAnti-Bacterial AgentsDNA, BacterialMethyltransferasesRNA, Ribosomal, 16S

Identifiers

PMID15155201
PMCPMC415585
OpenAlexW2134087618

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.