Evidence map›Paper›PMID 15150233›Full record

ArticleJournal of bacteriology2004

nsd, a locus that affects the Myxococcus xanthus cellular response to nutrient concentration.

Margaret Brenner, Anthony G Garza, Mitchell Singer

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.4field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Margaret BrennerSection of Microbiology and Center for Genetics and Development, The University of California, Davis, Davis, California 95616, USA.
Anthony G Garza
Mitchell Singer
University of California, Davis · US

Funding

UC Davis MCB T32 Administrative Supplement to Recognize Excellence in Diversity, Equity, Inclusion, and Accessibility (DEIA) MentorshipT32GM007377 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI CHEDIN, FREDERIC LOUIS · 1985 to 2023
$9.9M
Control of Initiation of Development in M. xanthusR01GM054592 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI SINGER, MITCHELL H. · 2003 to 2006
$982k
CONTROL OF INITIATION OF DEVELOPMENT IN M XANTHUSR29GM054592 · NIGMS · UNIVERSITY OF CALIFORNIA DAVIS · PI SINGER, MITCHELL H. · 1997 to 2001
$250k
NIGMS NIH HHS GM54592NIGMS NIH HHS R01 GM054592NIGMS NIH HHS R29 GM054592NIGMS NIH HHS T32 GM007377NIGMS NIH HHS T32GM07377
6 · The paper itself

Abstract

Expression of the previously reported Tn5lac Omega4469 insertion in Myxococcus xanthus cells is regulated by the starvation response. Interested in learning more about the starvation response, we cloned and sequenced the region containing the insertion. Our analysis shows that the gene fusion is located in an open reading frame that we have designated nsd (nutrient sensing/utilizing defective) and that its expression is driven by a sigma70-like promoter. Sequence analysis of the nsd gene product provides no information on the potential structure or function of the encoded protein. In a further effort to learn about the role of nsd in the starvation response, we closely examined the phenotype of cells carrying the nsd::Tn5lac Omega4469 mutation. Our analysis showed that these cells initiate development on medium that contains nutrients sufficient to sustain vegetative growth of wild-type cells. Furthermore, in liquid media these same nutrient concentrations elicit a severe impairment of growth of nsd cells. The data suggest that the nsd cells launch a starvation response when there are enough nutrients to prevent one. In support of this hypothesis, we found that, when grown in these nutrient concentrations, nsd cells accumulate guanosine tetraphosphate, the cellular starvation signal. Therefore, we propose that nsd is used by cells to respond to available nutrient levels.

Indexed as

DNA Transposable ElementsBase SequenceBiomassChromosome MappingCloning, MolecularGene Expression Regulation, BacterialGenes, BacterialGuanosine TetraphosphateMolecular Sequence DataMyxococcus xanthusRNA, MessengerDNA Transposable ElementsGuanosine TetraphosphateRNA, Messenger

Identifiers

PMID15150233
PMCPMC415774
OpenAlexW2157867381

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.