Evidence map›Paper›PMID 15148404›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

A gene cluster for secondary metabolism in oat: implications for the evolution of metabolic diversity in plants.

X Qi, S Bakht, M Leggett, C Maxwell, R Melton, A Osbourn

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 111 papers.

0numbers the graph read from it
0cells of the map it votes in
111citing papers in PubMed
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

111 citing papers in PubMed, 313 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Review
  5. The ins and outs of plant specialized metabolite gene organization.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  6. Article
  7. Review
  8. Article
  9. The Chemical Ecology of Plant Natural Products.Progress in the chemistry of organic natural products · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Review
  15. Unraveling the evolutionary dynamics of theFrontiers in plant science · 2023
    Article
  16. Article
  17. Review
  18. Review
  19. Article
  20. Review

51 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

X QiSainsbury Laboratory, John Innes Centre, Norwich NR4 7UH, United Kingdom.
S Bakht
M Leggett
C Maxwell
R Melton
A Osbourn
John Innes Centre · GBDuPont (United States) · USSainsbury Laboratory · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The evolution of the ability to synthesize specialized metabolites is likely to have been key for survival and diversification of different plant species. Oats (Avena spp.) produce antimicrobial triterpenoids (avenacins) that protect against disease. The oat beta-amyrin synthase gene AsbAS1, which encodes the first committed enzyme in the avenacin biosynthetic pathway, is clearly distinct from other plant beta-amyrin synthases. Here we show that AsbAS1 has arisen by duplication and divergence of a cycloartenol synthase-like gene, and that its properties have been refined since the divergence of oats and wheat. Strikingly, we have also found that AsbAS1 is clustered with other genes required for distinct steps in avenacin biosynthesis in a region of the genome that is not conserved in other cereals. Because the components of this gene cluster are required for at least four clearly distinct enzymatic processes (2,3-oxidosqualene cyclization, beta-amyrin oxidation, glycosylation, and acylation), it is unlikely that the cluster has arisen as a consequence of duplication of a common ancestor. Although clusters of paralogous genes are common in plants (e.g., gene clusters for rRNA and specific disease resistance), reports of clusters of genes that do not share sequence relatedness and whose products contribute to a single selectable function are rare [Gierl, A. & Frey, M. (2001) Planta 213, 493-498]. Taken together, our evidence has important implications for the generation of metabolic diversity in plants.

Indexed as

Evolution, MolecularAcylationAvenaCyclizationEdible GrainGene Expression ProfilingGene Expression Regulation, PlantGenes, PlantGenetic LinkageGenome, PlantGlycosylationIntramolecular TransferasesMultigene FamilyPhytosterolsSequence Homology, Nucleic AcidTriterpenes2,3-oxidosqualene-beta-amyrin-cyclasecycloartenolcycloartenol synthaseIntramolecular TransferasesPhytosterolsTriterpenes

Identifiers

PMID15148404
PMCPMC419586
OpenAlexW2054375136

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.