Evidence map›Paper›PMID 15147837›Full record

ArticleJournal of molecular biology2004

Identification of a new antizyme mRNA +1 frameshifting stimulatory pseudoknot in a subset of diverse invertebrates and its apparent absence in intermediate species.

Ivaylo P Ivanov, Christine B Anderson, Raymond F Gesteland, John F Atkins

Abstract read
In one paragraph

Article in Journal of molecular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed.

  1. Review
  2. Article
  3. Roles of polyamines in translation.The Journal of biological chemistry · 2018
    Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. FSDB: a frameshift signal database.Computational biology and chemistry · 2007
    Article
  11. Review
  12. Article
  13. Article
  14. Antisense-induced ribosomal frameshifting.Nucleic acids research · 2006
    Article
  15. Article
  16. Article
  17. Article
  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ivaylo P IvanovDepartment of Human Genetics, University of Utah, 15N 2030E Rm 7410, Salt Lake City, UT 84112-5330, USA.
Christine B Anderson
Raymond F Gesteland
John F Atkins

Funding

RECODING--DYNAMIC REPROGRAMMING OF GENETIC READOUTR01GM048152 · NIGMS · UNIVERSITY OF UTAH · PI ATKINS, JOHN F. · 1992 to 2004
$2.1M
NIGMS NIH HHS GM48152NIGMS NIH HHS R01 GM048152
6 · The paper itself

Abstract

The expression of eukaryotic antizyme genes requires +1 translational frameshifting. The frameshift in decoding most vertebrate antizyme mRNAs is stimulated by an RNA pseudoknot 3' of the frameshift site. Although the frameshifting event itself is conserved in a wide variety of organisms from yeast to mammals, until recently no corresponding 3' RNA pseudoknot was known in invertebrate antizyme mRNAs. A pseudoknot, different in structure and origin from its vertebrate counterparts, is now shown to be encoded by the antizyme genes of distantly related invertebrates. Identification of the 3' frameshifting stimulator in intermediate species or other invertebrates remains unresolved.

Indexed as

Frameshift MutationAnimalsBase SequenceCell LineHumansInvertebratesMolecular Sequence DataMutagenesis, Site-DirectedNucleic Acid ConformationPhylogenyProteinsRNA, MessengerSequence Homology, Nucleic Acidornithine decarboxylase antizymeProteinsRNA, Messenger

Identifiers

PMID15147837
PMCPMC7125782

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.