Evidence map›Paper›PMID 15146297›Full record

ArticleImmunogenetics2004

Early expression of two TdT isoforms in the hematopoietic system of the Mexican axolotl. Implications for the evolutionary origin of the N-nucleotide addition.

Rachel Golub, Sébastien André, Alexandre Hassanin, Pierre Affaticati, Mani Larijani, Julien S Fellah

Abstract read
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Article in Immunogenetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.2field-weighted citation impact, top 45% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Immunity in salamander regeneration: Where are we standing and where are we headed?Developmental dynamics : an official publication of the American Association of Anatomists · 2021
    Review
  3. Article
  4. Hematopoiesis: A Layered Organization Across Chordate Species.Frontiers in cell and developmental biology · 2020
    Review
  5. Amphibian macrophage development and antiviral defenses.Developmental and comparative immunology · 2016
    Review
  6. Article
  7. Evolution of B cell immunity.Annual review of animal biosciences · 2013
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Rachel GolubUnité du Développement des Lymphocytes, CNRS URA 1961 Institut Pasteur, 25-28 rue du Docteur Roux, 75724, Paris Cedex 15, France.
Sébastien André
Alexandre Hassanin
Pierre Affaticati
Mani Larijani
Julien S Fellah
Centre National de la Recherche Scientifique · FRInstitut de Systématique, Évolution, Biodiversité · FRUniversity of Toronto · CA

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Nontemplate (N)-nucleotide addition by the terminal dideoxynucleotidyl transferase (TdT) at the junctions of rearranging V( D) J gene segments greatly contribute to antigen-receptor diversity. TdT has been identified in several vertebrate species, where it is highly conserved. We report here the isolation of two forms of TdT mRNA in an amphibian, the Mexican axolotl. The isoform TdT1 shares all of the conserved structural motifs required for TdT activity and displays an average of 50-58% similarity at the amino acid level with TdT of other species. The second axolotl TdT variant ( TdT2) differs from TdT1 by a 57-amino acid deletion located between amino acids 165-222 of TdT1, including the first helix-hairpin-helix DNA-binding motif. During ontogeny, TdT products are first detected in the head of 6-week-old larvae and further in the head and trunk of 8-month-old larvae. These developmental stages correspond to the first detection of RAG1 and antigen-receptor (TCRbeta and IgHmicro) products in axolotl larvae. Our results suggest that in contrast to mammalian development, N diversity occurs early in axolotl development to diversify the primary repertoire. Phylogenetic analyses reveal that TdT and DNA polymerase mu(Pol mu) genes are closely related, and that both enzymes were already present in the common ancestor of jawed vertebrates.

Indexed as

Ambystoma mexicanumAmino Acid SequenceAnimalsCloning, MolecularDNA, ComplementaryDNA NucleotidylexotransferaseEvolution, MolecularGene ExpressionHematopoietic SystemIsoenzymesMolecular Sequence DataPhylogenySequence AlignmentDNA, ComplementaryDNA NucleotidylexotransferaseIsoenzymes

Identifiers

PMID15146297
OpenAlexW2124877326

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.