Evidence map›Paper›PMID 15143173›Full record

ArticleMolecular and cellular biology2004

Role of CTCF binding sites in the Igf2/H19 imprinting control region.

Piroska E Szabó, Shih-Huey E Tang, Francisco J Silva, Walter M K Tsark, Jeffrey R Mann

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 72 papers.

0numbers the graph read from it
0cells of the map it votes in
72citing papers in PubMed
6.1field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

72 citing papers in PubMed, 138 citations in OpenAlex.

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  18. Mother-child transmission of epigenetic information by tunable polymorphic imprinting.Proceedings of the National Academy of Sciences of the United States of America · 2018
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12 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Piroska E SzabóDivision of Biology, Beckman Research Institute of the City of Hope, 1450 East Duarte Rd., Duarte, CA 91010-3011, USA. pszabo@coh.org
Shih-Huey E Tang
Francisco J Silva
Walter M K Tsark
Jeffrey R Mann
City of Hope · US

Funding

Mechanisms of Genomic ImprintingR01GM064378 · NIGMS · VAN ANDEL RESEARCH INSTITUTE · PI SZABÓ, PIROSKA EDIT · 2002 to 2015
$4.3M
NIGMS NIH HHS GM064378NIGMS NIH HHS R01 GM064378
6 · The paper itself

Abstract

A approximately 2.4-kb imprinting control region (ICR) regulates somatic monoallelic expression of the Igf2 and H19 genes. This is achieved through DNA methylation-dependent chromatin insulator and promoter silencing activities on the maternal and paternal chromosomes, respectively. In somatic cells, the hypomethylated maternally inherited ICR binds the insulator protein CTCF at four sites and blocks activity of the proximal Igf2 promoter by insulating it from its distal enhancers. CTCF binding is thought to play a direct role in inhibiting methylation of the ICR in female germ cells and in somatic cells and, therefore, in establishing and maintaining imprinting of the Igf2/H19 region. Here, we report on the effects of eliminating ICR CTCF binding by severely mutating all four sites in mice. We found that in the female and male germ lines, the mutant ICR remained hypomethylated and hypermethylated, respectively, showing that the CTCF binding sites are dispensable for imprinting establishment. Postfertilization, the maternal mutant ICR acquired methylation, which could be explained by loss of methylation inhibition, which is normally provided by CTCF binding. Adjacent regions in cis-the H19 promoter and gene-also acquired methylation, accompanied by downregulation of H19. This could be the result of a silencing effect of the methylated maternal ICR.

Indexed as

Genomic ImprintingAnimalsBinding SitesCCCTC-Binding FactorDNA-Binding ProteinsDNA MethylationGene Expression RegulationInsulin-Like Growth Factor IIMiceMutationProtein BindingRepressor ProteinsRNA, Long NoncodingRNA, UntranslatedCCCTC-Binding FactorCtcf protein, mouseDNA-Binding ProteinsH19 long non-coding RNAInsulin-Like Growth Factor IIRepressor ProteinsRNA, Long NoncodingRNA, Untranslated

Identifiers

PMID15143173
PMCPMC416431
OpenAlexW2122112013

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.