Evidence map›Paper›PMID 15136717›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2004

Similar gene expression patterns characterize aging and oxidative stress in Drosophila melanogaster.

Gary N Landis, Diana Abdueva, Dmitriy Skvortsov, Junsheng Yang, Beth E Rabin, James Carrick, Simon Tavaré, John Tower

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 197 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
197citing papers in PubMed, 1 pooled it
8.4field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

197 citing papers in PubMed, 1 synthesis or guideline pooled it, 393 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
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  6. Article
  7. Dynamic Changes in Gene Expression Through Aging inbioRxiv : the preprint server for biology · 2024
    Article
  8. The role of mitochondria in sex- and age-specific gene expression in a species without sex chromosomes.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  9. Review
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  11. Evolution of innate immunity: lessons from mammalian models shaping our current view of insect immunity.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2024
    Review
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137 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Gary N LandisMolecular and Computational Biology Program, Department of Biological Sciences, University of Southern California, Los Angeles, CA 90089-1340, USA.
Diana Abdueva
Dmitriy Skvortsov
Junsheng Yang
Beth E Rabin
James Carrick
Simon Tavaré
John Tower
University of Cambridge · GBUniversity of Southern California · US

Funding

AGING-SPECIFIC GENE EXPRESSION IN DROSOPHILAR01AG011833 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TOWER, JOHN GERARD · 1994 to 2013
$2.8M
Computational Methods for Functional GenomicsR01GM067243 · NIGMS · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TAVARE, SIMON · 2002 to 2005
$1.6M
DROSOPHILA LONGEVITY ASSURANCE GENESR01AG011644 · NIA · UNIVERSITY OF SOUTHERN CALIFORNIA · PI TOWER, JOHN GERARD · 1993 to 2003
$1.2M
NIA NIH HHS AG11644NIA NIH HHS AG11833NIA NIH HHS R01 AG011833NIGMS NIH HHS GM67243NIGMS NIH HHS R01 GM067243
6 · The paper itself

Abstract

Affymetrix GeneChips were used to measure RNA abundance for approximately 13,500 Drosophila genes in young, old, and 100% oxygen-stressed flies. Data were analyzed by using a recently developed background correction algorithm and a robust multichip model-based statistical analysis that dramatically increased the ability to identify changes in gene expression. Aging and oxidative stress responses shared the up-regulation of purine biosynthesis, heat shock protein, antioxidant, and innate immune response genes. Results were confirmed by using Northerns and transgenic reporters. Immune response gene promoters linked to GFP allowed longitudinal assay of gene expression during aging in individual flies. Immune reporter expression in young flies was partially predictive of remaining life span, suggesting their potential as biomonitors of aging.

Indexed as

Gene ExpressionAgingAnimalsBlotting, NorthernDrosophila melanogasterGene Expression ProfilingGenes, ReporterHot TemperatureLongevityOligonucleotide Array Sequence AnalysisOxidative StressOxygenOxygen

Identifiers

PMID15136717
PMCPMC419663
OpenAlexW1967181393

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.