Evidence map›Paper›PMID 15133867›Full record

ArticleWorld journal of gastroenterology2004

mRNA expression profiling reveals a role of Helicobacter pylori vacuolating toxin in escaping host defense.

Jian-Ping Yuan, Tao Li, Zhen-Hong Li, Gui-Zhen Yang, Bao-Yu Hu, Xiao-Dong Shi, Tie-Liu Shi, Shan-Qing Tong, Xiao-Kui Guo

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.9field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Journal of clinical medicine · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 1 institution in 1 country.

Jian-Ping YuanDepartment of Microbiology and Parasitology, Shanghai Second Medical University, 280 Chongqingnan Road, Shanghai 200025, China.
Tao Li
Zhen-Hong Li
Gui-Zhen Yang
Bao-Yu Hu
Xiao-Dong Shi
Tie-Liu Shi
Shan-Qing Tong
Xiao-Kui Guo
Chinese Academy of Sciences · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo study the immune response of host to Helicobacter pylori VacA.

methodsThe monocyte/macrophage-like U937 cells were infected with Helicobacter pylori vacA-positive strain NCTC 11638 or isogenic vacA-negative mutant. Differentially expressed genes were identified at 2, 6, 10, and 24 h post-infection by cDNA microarray. Differential expressions of some genes were confirmed by Northern blot.

resultsMore than 100 genes altered their mRNA expression at different time points respectively, many of which were identified to be related to immune evasion.

conclusionVacA is a crucial element for H pylori to escape from host immune defense by means of differentially regulating the expression of some related genes. These genes, previously known or unknown to be involved in the mechanism of immune evasion, deserve further investigation to unearth much more information complicated in the immune response.

Indexed as

Gene Expression ProfilingBacterial ProteinsBacterial ToxinsCell LineGene Expression Regulation, BacterialHelicobacter pyloriHumansImmune SystemOligonucleotide Array Sequence AnalysisRNA, MessengerBacterial ProteinsBacterial ToxinsRNA, MessengerVacA protein, Helicobacter pylori

Identifiers

PMID15133867
PMCPMC4656298
OpenAlexW2419148125

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.