Evidence map›Paper›PMID 15133156›Full record

ArticlePlant physiology2004

Crop improvement through modification of the plant's own genome.

Caius M Rommens, Jaime M Humara, Jingsong Ye, Hua Yan, Craig Richael, Lynda Zhang, Rachel Perry, Kathleen Swords

RetractedAbstract readRetracted Publication
In one paragraph

Article in Plant physiology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It has been retracted, and should not be counted. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed.

  1. Review
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  6. An Insight into T-DNA Integration Events in Medicago sativa.International journal of molecular sciences · 2017
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

8 authors.

Caius M RommensJ.R. Simplot Company, Simplot Plant Sciences, Boise, Idaho 83706, USA. crommens@simplot.com
Jaime M Humara
Jingsong Ye
Hua Yan
Craig Richael
Lynda Zhang
Rachel Perry
Kathleen Swords

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Plant genetic engineering has, until now, relied on the incorporation of foreign DNA into plant genomes. Public concern about the extent to which transgenic crops differ from their traditionally bred counterparts has resulted in molecular strategies and gene choices that limit, but not eliminate, the introduction of foreign DNA. Here, we demonstrate that a plant-derived (P-) DNA fragment can be used to replace the universally employed Agrobacterium transfer (T-) DNA. Marker-free P-DNAs are transferred to plant cell nuclei together with conventional T-DNAs carrying a selectable marker gene. By subsequently linking a positive selection for temporary marker gene expression to a negative selection against marker gene integration, 29% of derived regeneration events contain P-DNA insertions but lack any copies of the T-DNA. Further refinements are accomplished by employing Omega-mutated virD2 and isopentenyl transferase cytokinin genes to impair T-DNA integration and select against backbone integration, respectively. The presented methods are used to produce hundreds of marker-free and backbone-free potato (Solanum tuberosum) plants displaying reduced expression of a tuber-specific polyphenol oxidase gene in potato. The modified plants represent the first example of genetically engineered plants that only contain native DNA.

Indexed as

Genome, PlantBase SequenceCrops, AgriculturalDNA, PlantGenetic EngineeringGenetic MarkersMolecular Sequence DataNicotianaPlants, Genetically ModifiedSequence Homology, Nucleic AcidSolanum tuberosumDNA, PlantGenetic Markers

Identifiers

PMID15133156
PMCPMC429395

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.