Evidence map›Paper›PMID 15132741›Full record

ArticleBMC biology2004

Evaluation of developmental phenotypes produced by morpholino antisense targeting of a sea urchin Runx gene.

James A Coffman, Carrie Dickey-Sims, Jeffrey S Haug, John J McCarthy, Anthony J Robertson

Open access · goldAbstract read
In one paragraph

Article in BMC biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 34 citations in OpenAlex.

  1. Article
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  4. Article
  5. Article
  6. Review
  7. Article
  8. Is Runx a linchpin for developmental signaling in metazoans?Journal of cellular biochemistry · 2009
    Article
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  10. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

James A CoffmanStowers Institute for Medical Research, 1000 E, 50th Street, Kansas City, MO 64110, USA. jac@stowers-institute.org
Carrie Dickey-Sims
Jeffrey S Haug
John J McCarthy
Anthony J Robertson
Stowers Institute for Medical Research · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundRunx transcription factors are important regulators of metazoan development. The sea urchin Runx gene SpRunt was previously identified as a trans-activator of the CyIIIa actin gene, a differentiation marker of larval aboral ectoderm. Here we extend the functional analysis of SpRunt, using morpholino antisense oligonucleotides (morpholinos) to interfere with SpRunt expression in the embryo.

resultsThe developmental effects of four different SpRunt-specific morpholinos were evaluated. The two morpholinos most effective at knocking down SpRunt produce an identical mitotic catastrophe phenotype at late cleavage stage that is an artifact of coincidental mis-targeting to histone mRNA, providing a cautionary example of the insufficiency of two different morpholinos as a control for specificity. The other two morpholinos produce gastrula stage proliferation and differentiation defects that are rescued by exogenous SpRunt mRNA. The expression of 22 genes involved in cell proliferation and differentiation was analyzed in the latter embryos by quantitative polymerase chain reaction. Knockdown of SpRunt was found to perturb the expression of differentiation markers in all of the major tissue territories as well as the expression of cell cycle control genes, including cyclin B and cyclin D.

conclusionsSpRunt is essential for embryonic development, and is required globally to coordinate cell proliferation and differentiation.

Indexed as

AnimalsEmbryo, NonmammalianGene Expression Regulation, DevelopmentalGene TargetingOligonucleotides, AntisensePhenotypeReverse Transcriptase Polymerase Chain ReactionRNA, MessengerSea UrchinsTranscription FactorsOligonucleotides, AntisenseRNA, MessengerSpRunt-1 protein, Strongylocentrotus purpuratusTranscription Factors

Identifiers

PMID15132741
PMCPMC419381
OpenAlexW1510477518

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.