Evidence map›Paper›PMID 15126483›Full record

ArticleJournal of bacteriology2004

Precise excision of the large pathogenicity island, SPI7, in Salmonella enterica serovar Typhi.

Susan M Bueno, Carlos A Santiviago, Alejandro A Murillo, Juan A Fuentes, A Nicole Trombert, Paula I Rodas, Philip Youderian, Guido C Mora

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 42 papers.

0numbers the graph read from it
0cells of the map it votes in
42citing papers in PubMed
8.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

42 citing papers in PubMed, 74 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Susan M BuenoInstituto de Ciencias Biomédicas, Universidad de Chile, Santiago, Chile.
Carlos A Santiviago
Alejandro A Murillo
Juan A Fuentes
A Nicole Trombert
Paula I Rodas
Philip Youderian
Guido C Mora
Pontificia Universidad Católica de Chile · CLTexas A&M University · USUniversity of Chile · CL

Funding

MECHANISMS OF YEAST MITOCHONDRIAL TRANSCRIPTIONR01GM036692 · NIGMS · UNIVERSITY OF COLORADO DENVER · PI JAEHNING, JUDITH A. · 1985 to 2002
$782k
Genomic Analysis of Salmonella typhi PathogenesisF06TW005645 · FIC · TEXAS A&M UNIVERSITY SYSTEM · PI YOUDERIAN, PHILIP A · 2001 to 2001
$35k
FIC NIH HHS F06 TW005645FIC NIH HHS TW05645NIGMS NIH HHS GM36692
6 · The paper itself

Abstract

The large pathogenicity island (SPI7) of Salmonella enterica serovar Typhi is a 133,477-bp segment of DNA flanked by two 52-bp direct repeats overlapping the pheU (phenylalanyl-tRNA) gene, contains 151 potential open reading frames, and includes the viaB operon involved in the synthesis of Vi antigen. Some clinical isolates of S. enterica serovar Typhi are missing the entire SPI7, due to its precise excision; these strains have lost the ability to produce Vi antigen, are resistant to phage Vi-II, and invade a human epithelial cell line more rapidly. Excision of SPI7 occurs spontaneously in a clinical isolate of S. enterica serovar Typhi when it is grown in the laboratory, leaves an intact copy of the pheU gene at its novel join point, and results in the same three phenotypic consequences. SPI7 is an unstable genetic element, probably an intermediate in the pathway of lateral transfer of such pathogenicity islands among enteric gram-negative bacteria.

Indexed as

Antigens, BacterialBase SequenceCell LineHumansMolecular Sequence DataOperonPhenotypePolysaccharides, BacterialRecombination, GeneticRNA, Transfer, Amino AcylSalmonella typhiAntigens, BacterialPolysaccharides, BacterialRNA, Transfer, Amino Acyl

Identifiers

PMID15126483
PMCPMC400632
OpenAlexW1996954693

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.