ArticleGenome research2004
The Ensembl automatic gene annotation system.
Article in Genome research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 201 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
201 citing papers in PubMed.
- Annotating genomes at increased scale and resolution.Nature reviews. Genetics · 2026Review
- The developmental and evolutionary characteristics of transcription factor binding site clustered regions based on an explainable machine learning model.Nucleic acids research · 2024Article
- Comparative evolutionary analyses of eight whitefly Bemisia tabaci sensu lato genomes: cryptic species, agricultural pests and plant-virus vectors.BMC genomics · 2023Article
- The genomes of Vischeria oleaginous microalgae shed light on the molecular basis of hyper-accumulation of lipids.BMC biology · 2023Article
- A Transferable Machine Learning Framework for Predicting Transcriptional Responses of Genes Across Species.Methods in molecular biology (Clifton, N.J.) · 2023Article
- Proteome dataset of sea bass (Data in brief · 2022Article
- Fungal genomes: suffering with functional annotation errors.IMA fungus · 2021Article
- Terpene Synthases and Terpene Variation inPlant physiology · 2020Article
- Genome sequence and comparative analysis of reindeer (Rangifer tarandus) in northern Eurasia.Scientific reports · 2020Article
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- Estradiol and genistein effects on the sea bass (Data in brief · 2019Article
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- The genome resources for conservation of Indo-Pacific humpback dolphin, Sousa chinensis.Scientific data · 2019Article
- The UCSC Genome Browser database: 2019 update.Nucleic acids research · 2019Article
- Functional Annotation of the Transcriptome of the Pig,Frontiers in genetics · 2019Article
- Identification and quantification of domestic feline cytochrome P450 transcriptome across multiple tissues.Journal of veterinary pharmacology and therapeutics · 2019Article
- Article
141 more citing papers are in PubMed but not listed here.
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
7 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
As more genomes are sequenced, there is an increasing need for automated first-pass annotation which allows timely access to important genomic information. The Ensembl gene-building system enables fast automated annotation of eukaryotic genomes. It annotates genes based on evidence derived from known protein, cDNA, and EST sequences. The gene-building system rests on top of the core Ensembl (MySQL) database schema and Perl Application Programming Interface (API), and the data generated are accessible through the Ensembl genome browser (http://www.ensembl.org). To date, the Ensembl predicted gene sets are available for the A. gambiae, C. briggsae, zebrafish, mouse, rat, and human genomes and have been heavily relied upon in the publication of the human, mouse, rat, and A. gambiae genome sequence analysis. Here we describe in detail the gene-building system and the algorithms involved. All code and data are freely available from http://www.ensembl.org.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.