Evidence map›Paper›PMID 15121899›Full record

ArticleNucleic acids research2004

APOBEC3G is a single-stranded DNA cytidine deaminase and functions independently of HIV reverse transcriptase.

Rodolphe Suspène, Peter Sommer, Michel Henry, Stéphane Ferris, Denise Guétard, Sylvie Pochet, Ann Chester, Naveenan Navaratnam, Simon Wain-Hobson, Jean-Pierre Vartanian

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 118 papers.

0numbers the graph read from it
0cells of the map it votes in
118citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

118 citing papers in PubMed, 199 citations in OpenAlex.

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  9. A CRISPR-Cas Cure for HIV/AIDS.International journal of molecular sciences · 2023
    Review
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58 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 1 institution in 1 country.

Rodolphe SuspèneUnité de Rétrovirologie Moléculaire, Institut Pasteur, 28 rue du Docteur Roux, 75724 Paris cedex 15, France.
Peter Sommer
Michel Henry
Stéphane Ferris
Denise Guétard
Sylvie Pochet
Ann Chester
Naveenan Navaratnam
Simon Wain-Hobson
Jean-Pierre Vartanian
Institut Pasteur · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the absence of the viral vif gene, human immunodeficiency virus (HIV) may be restricted by the APOBEC3G gene on chromosome 22. The role of the HIV Vif protein is to exclude host cell APOBEC3G from the budding virion. As APOBEC3G shows sequence homology to cytidine deaminases, it is presumed that in the absence of Vif, cytidine residues in the cDNA are deaminated yielding uracil. It is not known if additional proteins mediate APOBEC3G function or if deamination occurs in concert with reverse transcription. This report describes an in vitro assay showing that Baculovirus derived APOBEC3G alone extensively deaminates cDNA independently of reverse transcriptase. It reproduces the dinucleotide context typical of G --> A hypermutants derived from a Delta(vif) virus. By using an RNaseH- form of reverse transcriptase, it was shown that the cDNA has to be free of its RNA template to allow deamination. APOBEC3G deamination of dC or dCTP was not detected. In short, APOBEC3G is a single-stranded DNA cytidine deaminase capable of restricting retroviral replication.

Indexed as

APOBEC-3G DeaminaseBase SequenceCytidine DeaminaseDinucleoside PhosphatesDNA, Single-StrandedHIV Reverse TranscriptaseNucleoside DeaminasesProteinsRepressor ProteinsSubstrate SpecificityTranscription, GeneticAPOBEC-3G DeaminaseAPOBEC3G protein, humanCytidine Deaminasecytidylyl-(3'-5')-cytidineDinucleoside PhosphatesDNA, Single-StrandedHIV Reverse TranscriptaseNucleoside DeaminasesProteinsRepressor Proteins

Identifiers

PMID15121899
PMCPMC419444
OpenAlexW1995117749

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.