Evidence map›Paper›PMID 15118075›Full record

ArticleNucleic acids research2004

Alpha1-induced DNA bending is required for transcriptional activation by the Mcm1-alpha1 complex.

Edward A Carr, Janet Mead, Andrew K Vershon

Open access · bronzeAbstract read
In one paragraph

Article in Nucleic acids research, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.1field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 23 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Mcm1p binding sites in ARG1 positively regulate Gcn4p binding and SWI/SNF recruitment.Biochemical and biophysical research communications · 2009
    Article
  7. Article
  8. Review
  9. Article
  10. Bayesian error analysis model for reconstructing transcriptional regulatory networks.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  11. Article
  12. Article
  13. Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Edward A CarrWaksman Institute and Department of Molecular Biology and Biochemistry, Rutgers University, Piscataway, NJ 08854, USA.
Janet Mead
Andrew K Vershon
Rutgers, The State University of New Jersey · US

Funding

MOLECULAR INTERACTIONS OF A YEAST HOMEODOMAIN PROTEINR01GM049265 · NIGMS · RUTGERS THE ST UNIV OF NJ NEW BRUNSWICK · PI VERSHON, ANDREW · 1993 to 2005
$1.7M
NIGMS NIH HHS GM49265NIGMS NIH HHS R01 GM049265
6 · The paper itself

Abstract

The yeast Mcm1 protein is a founding member of the MADS-box family of transcription factors that is involved in the regulation of diverse sets of genes through interactions with distinct cofactor proteins. Mcm1 interacts with the Matalpha1 protein to activate the expression of the alpha-cell type-specific genes. To understand the requirement of the cofactor alpha1 for Mcm1-alpha1-dependent transcriptional activation we analyzed the recruitment of Mcm1 to the promoters of alpha-specific genes in vivo and found that Mcm1 is able to bind to the promoters of alpha-specific genes in the absence of alpha1. This suggests the function of alpha1 is more complex than simply recruiting Mcm1. Several MADS-box transcription factors, including Mcm1, induce DNA bending and there is evidence the proper bend may be required for transcriptional activation. We analyzed Mcm1-dependent bending of a Mcm1-alpha1 binding site in the presence and absence of alpha1 and found that Mcm1 alone shows a reduced DNA-bend at this site compared with other Mcm1 binding sites. However, the addition of alpha1 markedly increases the DNA-bend and we present evidence this bend is required for full transcriptional activation. These results support a model in which proper DNA-bending by the Mcm1-alpha1 complex is required for transcriptional activation.

Indexed as

Gene Expression Regulation, FungalTranscriptional ActivationBase SequenceBinding SitesConsensus SequenceDNA, FungalHomeodomain ProteinsMacromolecular SubstancesMinichromosome Maintenance 1 ProteinModels, MolecularNucleic Acid ConformationRepressor ProteinsResponse ElementsSaccharomyces cerevisiae ProteinsDNA, FungalHomeodomain ProteinsMacromolecular SubstancesMATA1 protein, S cerevisiaeMinichromosome Maintenance 1 ProteinRepressor ProteinsSaccharomyces cerevisiae Proteins

Identifiers

PMID15118075
PMCPMC419449
OpenAlexW1992678801

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.