Evidence map›Paper›PMID 15117971›Full record

ArticleThe Journal of experimental medicine2004

Somatic hypermutation is limited by CRM1-dependent nuclear export of activation-induced deaminase.

Kevin M McBride, Vasco Barreto, Almudena R Ramiro, Pete Stavropoulos, Michel C Nussenzweig

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 104 papers.

0numbers the graph read from it
0cells of the map it votes in
104citing papers in PubMed
5.9field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

104 citing papers in PubMed, 221 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Review
  8. Activation-induced cytidine deaminase: in sickness and in health.Journal of cancer research and clinical oncology · 2020
    Review
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Article
  20. Review

44 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Kevin M McBrideLaboratory of Molecular Immunology, The Rockefeller University, New York, NY 10021, USA.
Vasco Barreto
Almudena R Ramiro
Pete Stavropoulos
Michel C Nussenzweig
Center of Molecular Immunology (Cuba) · CURockefeller University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Somatic hypermutation (SHM) and class switch recombination (CSR) are initiated in activated B lymphocytes by activation-induced deaminase (AID). AID is thought to make lesions in DNA by deaminating cytidine residues in single-stranded DNA exposed by RNA polymerase during transcription. Although this must occur in the nucleus, AID is found primarily in the cytoplasm. Here we show that AID is actively excluded from the nucleus by an exportin CRM1-dependent pathway. The AID nuclear export signal (NES) is found at the carboxyl terminus of AID in a region that overlaps a sequence required for CSR but not SHM. We find that AID lacking a functional NES causes more hypermutation of a nonphysiologic target gene in transfected fibroblasts. However, the NES does not impact on the rate of mutation of immunoglobulin genes in B lymphocytes, suggesting that the AID NES does not limit AID activity in these cells.

Indexed as

Receptors, Cytoplasmic and NuclearAmino Acid SequenceAminohydrolasesAnimalsBase SequenceB-LymphocytesCell LineCells, CulturedDNA PrimersEnzyme ActivationExportin 1 ProteinHumansKaryopherinsMiceMolecular Sequence DataPeptide FragmentsAminohydrolasesDNA PrimersExportin 1 ProteinKaryopherinsPeptide FragmentsReceptors, Cytoplasmic and NuclearRecombinant Proteins

Identifiers

PMID15117971
PMCPMC2211910
OpenAlexW2151225501

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.