Evidence map›Paper›PMID 15113415›Full record

ArticleMolecular cancer2004

Epigenetic CRBP downregulation appears to be an evolutionarily conserved (human and mouse) and oncogene-specific phenomenon in breast cancer.

Alice Arapshian, Silvina Bertran, Yuvarani S Kuppumbatti, Shigeo Nakajo, Rafael Mira-y-Lopez

Open access · goldAbstract read
In one paragraph

Article in Molecular cancer, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
  2. Article
  3. Methylation-Mediated Silencing ofJournal of oncology · 2022
    Article
  4. Efficacy of the dietary histone deacetylase inhibitor butyrate alone or in combination with vitamin A against proliferation of MCF-7 human breast cancer cells.Brazilian journal of medical and biological research = Revista brasileira de pesquisas medicas e biologica · 2012
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Alice ArapshianDepartment of Medicine, Mount Sinai School of Medicine, New York, NY 10029-6574, USA. aa74ny@yahoo.com
Silvina Bertran
Yuvarani S Kuppumbatti
Shigeo Nakajo
Rafael Mira-y-Lopez
Icahn School of Medicine at Mount Sinai · USShowa Pharmaceutical University · JP

Funding

ABERRANT RETINOID SIGNALING IN BREAST CANCERR01CA054273 · NCI · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI FARIAS, EDUARDO F · 1997 to 2010
$3.0M
RETINOIC ACID AND CYCLIC AMP IN BREAST CANCERR29CA054273 · NCI · MOUNT SINAI SCHOOL OF MEDICINE OF CUNY · PI MIRA-Y-LOPEZ, RAFAEL · 1991 to 1995
–
NCI NIH HHS CA54273NCI NIH HHS R01 CA054273
6 · The paper itself

Abstract

backgroundThe cellular retinol binding protein I gene (CRBP) is downregulated in a subset of human breast cancers and in MMTV-Myc induced mouse mammary tumors. Functional studies suggest that CRBP downregulation contributes to breast tumor progression. What is the mechanism underlying CRBP downregulation in cancer? Here we investigated the hypothesis that CRBP is epigenetically silenced through DNA hypermethylation in human and mouse breast cancer.

resultsBisulfite sequencing of CRBP in a panel of 6 human breast cancer cell lines demonstrated that, as a rule, CRBP hypermethylation is closely and inversely related to CRBP expression and identified one exception to this rule. Treatment with 5-azacytidine, a DNA methyltransferase inhibitor, led to CRBP reexpression, supporting the hypothesis that CRBP hypermethylation is a proximal cause of CRBP silencing. In some cells CRBP reexpression was potentiated by co-treatment with retinoic acid, an inducer of CRBP, and trichostatin A, a histone deacetylase inhibitor. Southern blot analysis of a small panel of human breast cancer specimens identified one case characterized by extensive CRBP hypermethylation, in association with undetectable CRBP mRNA and protein. Bisulfite sequencing of CRBP in MMTV-Myc and MMTV-Neu/NT mammary tumor cell lines extended the rule of CRBP hypermethylation and silencing (both seen in MMTV-Myc but not MMTV-Neu/NT cells) from human to mouse breast cancer and suggested that CRBP hypermethylation is an oncogene-specific event.

conclusionCRBP hypermethylation appears to be an evolutionarily conserved and principal mechanism of CRBP silencing in breast cancer. Based on the analysis of transgenic mouse mammary tumor cells, we hypothesize that CRBP silencing in human breast cancer may be associated with a specific oncogenic signature.

Indexed as

DNA MethylationAnimalsBlotting, WesternBreast NeoplasmsCell Line, TumorDown-RegulationErb-b2 Receptor Tyrosine KinasesEvolution, MolecularGene Expression Regulation, NeoplasticHumansHydroxamic AcidsMiceOncogenesProto-Oncogene Proteins c-mycRetinol-Binding ProteinsRetinol-Binding Proteins, CellularErb-b2 Receptor Tyrosine KinasesHydroxamic AcidsProto-Oncogene Proteins c-mycRetinol-Binding ProteinsRetinol-Binding Proteins, CellularRNA, MessengerTretinointrichostatin A

Identifiers

PMID15113415
PMCPMC419713
OpenAlexW2103026623

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.