Evidence map›Paper›PMID 15112348›Full record

ArticleWorld journal of gastroenterology2004

C-kit gene mutation in human gastrointestinal stromal tumors.

Ying-Yong Hou, Yun-Shan Tan, Meng-Hong Sun, Yong-Kun Wei, Jian-Fang Xu, Shao-Hua Lu, Su-Jie A-Ke-Su, Yan-Nan Zhou, Feng Gao, Ai-Hua Zheng and 5 more

Open access · hybridAbstract read
In one paragraph

Article in World journal of gastroenterology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 37 citations in OpenAlex.

  1. Expression and mutation ofOncology letters · 2016
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  4. Low ING4 protein expression detected by paraffin-section immunohistochemistry is associated with poor prognosis in untreated patients with gastrointestinal stromal tumors.Gastric cancer : official journal of the International Gastric Cancer Association and the Japanese Gastric Cancer Association · 2014
    Article
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  6. The Frequency of Mutations in Exon 11 of the c-kit Gene in Patients With Leukemia.Turkish journal of haematology : official journal of Turkish Society of Haematology · 2012
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  7. Article
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  12. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Ying-Yong HouDepartment of Pathology, Zongshan Hospital, Fudan University, Shanghai 200032, China.
Yun-Shan Tan
Meng-Hong Sun
Yong-Kun Wei
Jian-Fang Xu
Shao-Hua Lu
Su-Jie A-Ke-Su
Yan-Nan Zhou
Feng Gao
Ai-Hua Zheng
Tai-Ming Zhang
Wen-Zhong Hou
Jian Wang
Xiang Du
Xiong-Zeng Zhu
Sun Yat-sen University · CNThe First Affiliated Hospital, Sun Yat-sen University · CNFudan University Shanghai Cancer Center · CNFudan University · CNZhongshan Hospital · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimTo investigate the significance of c-kit gene mutation in gastrointestinal stromal tumors (GIST).

methodsFifty two cases of GIST and 28 cases of other tumors were examined. DNA samples were extracted from paraffin sections and fresh blocks. Exons 11, 9 and 13 of the c-kit gene were amplified by PCR and sequenced.

resultsMutations of exon 11 were found in 14 of 25 malignant GISTs (56%), mutations of exon 11 of the c-kit gene were revealed in 2 of 19 borderline GISTs (10.5%), and no mutation was found in benign tumors. The mutation rate showed significant difference (chi2=14.39, P<0.01) between malignant and benign GISTs. Most of mutations consisted of the in-frame deletion or replication from 3 to 48 bp in heterozygous and homozygous fashions, None of the mutations disrupted the downstream reading frame of the gene. Point mutations and frame deletions were most frequently observed at codons 550-560, but duplications were most concentrated at codons 570-585. No mutations of exons 9 and 13 were revealed in GISTs, Neither c-kit gene expression nor gene mutations were found in 3 leiomyomas, 8 leiomyosarcomas, 2 schwannomas, 2 malignant peripheral nerve sheath tumors, 2 intra-abdominal fibromatoses, 2 malignant fibrous histiocytomas and 9 adenocarcinomas.

conclusionC-kit gene mutations occur preferentially in malignant GISTs and might be a clinically useful adjunct marker in the evaluation of GISTs and can help to differentiate GISTs from other mesenchymal tumors of gastrointestinal tract, such as smooth muscle tumors, schwannomas, etc.

Indexed as

MutationAmino Acid SequenceDNA Mutational AnalysisExonsGastrointestinal NeoplasmsHumansMolecular Sequence DataProto-Oncogene Proteins c-kitStromal CellsProto-Oncogene Proteins c-kit

Identifiers

PMID15112348
PMCPMC4622772
OpenAlexW2160794556

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.