Evidence map›Paper›PMID 15112104›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2004

Gene content of the 750-kb critical region for mouse embryonic ectoderm lethal tcl-w5.

Kuniya Abe, Misako Yuzuriha, Michihiko Sugimoto, Minoru S H Ko, Mgavi Brathwaite, Paul Waeltz, Ramaiah Nagaraja

Abstract read
PubMed Publisher
In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.1field-weighted citation impact, top 65% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. WDR81 is necessary for purkinje and photoreceptor cell survival.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2013
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Kuniya AbeTechnology and Development Team for Mammalian Cellular Dynamics, BioResource Center, RIKEN Tsukuba Institute, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan. abe@rtc.riken.go.jp
Misako Yuzuriha
Michihiko Sugimoto
Minoru S H Ko
Mgavi Brathwaite
Paul Waeltz
Ramaiah Nagaraja
National Institute on Aging · USNational Institutes of Health · USRIKEN BioResource Research Center · JPKumamoto University · JP

Funding

Systematic analysis of gene regulatory networksZIAAG000656 · NIA · NATIONAL INSTITUTE ON AGING · PI SCHLESSINGER, DAVID · 2009 to 2016
$3.9M
Systematic analysis of gene regulatory networksZ01AG000656 · NIA · NATIONAL INSTITUTE ON AGING · PI KO, MINORU S · 1999 to 2008
$1.6M
MAPPING AND GENE CONTENT OF THE MOUSE T-COMPLEXZ01AG000644 · NIA · AGING · PI NAGARAJA, RAMAIAH · 1998 to 2007
$62k
6 · The paper itself

Abstract

Mice homozygous for the t(w5) allele arrest at gastrulation from defects associated with embryonic ectoderm development. The mutated gene has been genetically closely linked to the H-2K locus in the mouse MHC region, flanked by markers H-2Pb and D17Mit147. Aiming at the positional cloning of the mutated gene, we constructed a BAC contig spanning about 1 Mb of the genomic region. On the basis of our mapping and sequencing analysis of the BACs combined with public genome data, EST database searches, and gene prediction programs, we delimit the 1.06 cM of the t(w5) critical region to 750 kb, and infer 36 genes (1/20 kb) encoded in the interval. All of the 33 genes tested were confirmed as expressed in embryonic tissues by RT-PCR analyses, and in many cases by EST expression profiles as well. Thus, this highly gene-rich region is essentially totally transcribed during early development and provides priority candidates to be screened for the t(w5) embryonic lesion.

Indexed as

AnimalsBase SequenceChromosome MappingChromosomes, Artificial, BacterialEctodermExpressed Sequence TagsGenes, MHC Class IGenetic MarkersMiceMolecular Sequence DataReverse Transcriptase Polymerase Chain ReactionRNASequence Analysis, DNAGenetic MarkersRNA

Identifiers

PMID15112104
OpenAlexW1965766076

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.