ArticleTAG. Theoretical and applied genetics. Theoretische und angewandte Genetik2004
A microsatellite map of white clover.
Article in TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.
What it found
Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.
The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
29 citing papers in PubMed.
- Genetics and plasticity of white leaf mark variegation in white clover (Trifolium repens L.).Annals of botany · 2024Article
- Optimization of Protocols for the Induction of Callus and Plant Regeneration in White Clover (International journal of molecular sciences · 2023Article
- Chromosome and Genome Diversity in the GenusPlants (Basel, Switzerland) · 2021Review
- Genetic diversity and population structure analysis in a large collection of white clover (PeerJ · 2021Article
- Genetic diversity between two Egyptian clover varieties and QTL analysis for some agro-morphological traits.Molecular biology reports · 2019Article
- Understanding the Complexity of Cold Tolerance in White Clover using Temperature Gradient Locations and a GWAS Approach.The plant genome · 2018Article
- QTL mapping for haploid male fertility by a segregation distortion method and fine mapping of a key QTL qhmf4 in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2017Article
- Genomic rearrangements and signatures of breeding in the allo-octoploid strawberry as revealed through an allele dose based SSR linkage map.BMC plant biology · 2014Article
- An integrated genetic linkage map for white clover (Trifolium repens L.) with alignment to Medicago.BMC genomics · 2013Article
- A hybrid next generation transcript sequencing-based approach to identify allelic and homeolog-specific single nucleotide polymorphisms in allotetraploid white clover.BMC genomics · 2013Article
- Development of a genome-wide multiple duplex-SSR protocol and its applications for the identification of selfed progeny in switchgrass.BMC genomics · 2012Article
- Comparative Genetic Mapping and Discovery of Linkage Disequilibrium Across Linkage Groups in White Clover (Trifolium repens L.).G3 (Bethesda, Md.) · 2012Article
- Microsatellite allele dose and configuration establishment (MADCE): an integrated approach for genetic studies in allopolyploids.BMC plant biology · 2012Article
- Functional markers for gene mapping and genetic diversity studies in sugarcane.BMC research notes · 2011Article
- The genetic location of the self-incompatibility locus in white clover (Trifolium repens L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Identification of genetic factors influencing salt stress tolerance in white clover (Trifolium repens L.) by QTL analysis.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2010Article
- Identification of homologous, homoeologous and paralogous sequence variants in an outbreeding allopolyploid species based on comparison with progenitor taxa.Molecular genetics and genomics : MGG · 2008Article
- Genome-wide identification of microsatellites in white clover (Trifolium repens L.) using FIASCO and phpSSRMiner.Plant methods · 2008Article
- Evidence on the molecular basis of the Ac/ac adaptive cyanogenesis polymorphism in white clover (Trifolium repens L).Genetics · 2008Article
- Genome mapping of white clover (Trifolium repens L.) and comparative analysis within the Trifolieae using cross-species SSR markers.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The white clover ( Trifolium repens) nuclear genome (n = 2x = 16) is an important yet under-characterised genetic environment. We have developed simple sequence repeat (SSR) genetic markers for the white clover genome by mining an expressed sequence tag (EST) database and by isolation from enriched genomic libraries. A total of 2,086 EST-derived SSRs (EST-SSRs) were identified among 26,480 database accessions. Evaluation of 792 EST-SSR primer pairs resulted in 566 usable EST-SSRs. Of these, 335 polymorphic EST-SSRs, used in concert with 30 genomic SSRs, detected 493 loci in the white clover genome using 92 F1 progeny from a pair cross between two highly heterozygous genotypes--364/7 and 6525/5. Map length, as estimated using the joinmap algorithm, was 1,144 cM and spanned all 16 homologues. The R (red leaf) locus was mapped to linkage group B1 and is tightly linked to the microsatellite locus prs318c. The eight homoeologous pairs of linkage groups within the white clover genome were identified using 96 homoeologous loci. Segregation distortion was detected in four areas (groups A1, D1, D2 and H2). Marker locus density varied among and within linkage groups. This is the first time EST-SSRs have been used to build a whole-genome functional map and to describe subgenome organisation in an allopolyploid species, and T. repens is the only Trifolieae species to date to be mapped exclusively with SSRs. This gene-based microsatellite map will enable the resolution of quantitative traits into Mendelian characters, the characterisation of syntenic relationships with other genomes and acceleration of white clover improvement programmes.
Indexed as
Identifiers
15103407What OpenQuestion holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.