Evidence map›Paper›PMID 15096570›Full record

Trial reportThe Journal of molecular diagnostics : JMD2004

Detection of genomic polymorphisms associated with venous thrombosis using the invader biplex assay.

Madhumita Patnaik, Jeffrey S Dlott, Robert N Fontaine, M T Subbiah, Martin J Hessner, Kelly A Joyner, Marlies R Ledford, Eduardo C Lau, Cynthia Moehlenkamp, Jean Amos and 2 more

Open access · bronzeAbstract readClinical TrialComparative StudyRandomized Controlled Trial
In one paragraph

Trial report in The Journal of molecular diagnostics : JMD, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.7field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 26 citations in OpenAlex.

  1. Trial
  2. Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 5 institutions in 2 countries.

Madhumita PatnaikSpecialty Laboratories Inc., Santa Monica, California, USA. meeta@Pathwaydx.com
Jeffrey S Dlott
Robert N Fontaine
M T Subbiah
Martin J Hessner
Kelly A Joyner
Marlies R Ledford
Eduardo C Lau
Cynthia Moehlenkamp
Jean Amos
Bailing Zhang
Thomas M Williams
University of New Mexico · USUniversity of Miami · USIndiana Hemophilia and Thrombosis Center · USMedical College of Wisconsin · USSpecialty Materials (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A multi-site study to assess the accuracy and performance of the biplex Invader assay for genotyping five polymorphisms implicated in venous thrombosis was carried out in seven laboratories. Genotyping results obtained using the Invader biplex assay were compared to those obtained from a reference method, either allele-specific polymerase chain reaction (AS-PCR), restriction fragment length polymorphism (PCR-RFLP) or PCR-mass spectrometry. Results were compared for five loci associated with venous thrombosis: Factor V Leiden, Factor II (prothrombin) G20210A, methylenetetrahydrofolate reductase (MTHFR) C677T and A1298C, and plasminogen activator inhibitor (PAI-1) 4G/5G. Of a total of 1448 genotypes tested in this study, there were 22 samples that gave different results between the Invader biplex assay and the PCR-based methods. On further testing, 21 were determined to be correctly genotyped by the Invader Assay and only a single discrepancy was resolved in favor of the PCR-based assays. The compiled results demonstrate that the Invader biplex assay provides results more than 99.9% concordant with standard PCR-based techniques and is a rapid and highly accurate alternative to target amplification-based methods.

Indexed as

Polymorphism, Single NucleotideDNADNA Mutational AnalysisFactor VFluorescent DyesGenotypeHumansMass SpectrometryMethylenetetrahydrofolate Reductase (NADPH2)Plasminogen Activator Inhibitor 1Polymerase Chain ReactionPolymorphism, Restriction Fragment LengthProthrombinReproducibility of ResultsSensitivity and SpecificitySpectrometry, FluorescenceDNAFactor Vfactor V LeidenFluorescent DyesMethylenetetrahydrofolate Reductase (NADPH2)Plasminogen Activator Inhibitor 1Prothrombin

Identifiers

PMID15096570
PMCPMC1867477
OpenAlexW2027812997

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.