Evidence map›Paper›PMID 15085198›Full record

ArticleThe Journal of clinical investigation2004

Human immunoglobulin selection associated with class switch and possible tolerogenic origins for C delta class-switched B cells.

Nai-Ying Zheng, Kenneth Wilson, Xiaojian Wang, Angela Boston, Grant Kolar, Stephen M Jackson, Yong-Jun Liu, Virginia Pascual, J Donald Capra, Patrick C Wilson

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 90 citations in OpenAlex.

  1. Redemption of autoantibodies on anergic B cells by variable-region glycosylation and mutation away from self-reactivity.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Trial
  2. Trial
  3. Article
  4. Article
  5. Article
  6. Article
  7. Teleost IgDiScience · 2023
    Article
  8. Article
  9. Article
  10. B cells defined by immunoglobulin isotypes.Clinical and experimental immunology · 2022
    Article
  11. Article
  12. Review
  13. Article
  14. Review
  15. Kappa-on-Heavy (KoH) bodies are a distinct class of fully-human antibody-like therapeutic agents with antigen-binding properties.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  16. Article
  17. Teleost IgDCell reports · 2019
    Article
  18. Article
  19. Review
  20. The enigmatic function of IgD: some answers at last.European journal of immunology · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Nai-Ying ZhengMolecular Immunogenetics, Oklahoma Medical Research Foundation, Oklahoma City, Oklahoma 73104, USA.
Kenneth Wilson
Xiaojian Wang
Angela Boston
Grant Kolar
Stephen M Jackson
Yong-Jun Liu
Virginia Pascual
J Donald Capra
Patrick C Wilson
Oklahoma Medical Research Foundation · USThe University of Texas MD Anderson Cancer Center · US

Funding

THE EFFECTS OF ERK PATHWAY INHIBITION ON DNA METHYLATION IN SLEP20RR015577 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI CENTOLA, MICHAEL B · 2000 to 2009
$21.5M
SWI/SNF-REGULATED POSTNATAL ANGIOGENESISP20RR018758 · NCRR · OKLAHOMA MEDICAL RESEARCH FOUNDATION · PI MCEVER, RODGER PAUL · 2003 to 2011
$14.9M
NCRR NIH HHS P20 RR015577NCRR NIH HHS P20 RR018758NCRR NIH HHS P20RR08758-01NCRR NIH HHS P20RR15577-02PHS HHS A112127-29
6 · The paper itself

Abstract

Current paradigms of peripheral B cell selection suggest that autoreactive B cells are controlled by clonal deletion, anergy, and developmental arrest. We report that changes to the human antibody repertoire likely resulting from these mechanisms both for a well-characterized autoreactivity from antibodies encoded by the V(H)4-34 gene and for other hallmarks of an autoreactive repertoire are apparent mainly for class-switched B cells and not for IgM germinal center, IgM memory, or IgM plasma cells. Other possible indicators of autoreactivity found selected with immunoglobulin class include J(H)6 gene segment usage, increased frequency of B cells with long third hypervariable regions, and distal J(kappa) gene segment bias. Of particular interest is the finding that B cells with these same characteristics are selected into the lineage of B cells that have undergone the unusual class switch from constant region C mu to C delta (C delta-CS). The C delta-CS population also displays an increased frequency of charged amino acids localized to the complementarity-determining regions, further suggesting autoreactivity, and evidence is presented that these B cells had undergone extensive receptor editing. Thus, the C delta-CS lineage may be a "sink" for B cells harboring autoreactive specificities in normal humans. A model for a new tolerizing mechanism that could account for the C delta-CS lineage is presented.

Indexed as

Immune ToleranceImmunoglobulin Class SwitchingAntibodies, MonoclonalB-LymphocytesCell LineageComplementarity Determining RegionsHumansImmunoglobulin Constant RegionsImmunoglobulin delta-ChainsImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulin MImmunoglobulin Variable RegionPolymerase Chain ReactionAntibodies, MonoclonalComplementarity Determining RegionsImmunoglobulin Constant RegionsImmunoglobulin delta-ChainsImmunoglobulin GImmunoglobulin Heavy ChainsImmunoglobulin MImmunoglobulin Variable Region

Identifiers

PMID15085198
PMCPMC385404
OpenAlexW2014014007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.