Evidence map›Paper›PMID 15082765›Full record

ArticleMolecular and cellular biology2004

In vitro processing of the 3'-overhanging DNA in the postcleavage complex involved in V(D)J joining.

Tadashi Nishihara, Fumikiyo Nagawa, Hirofumi Nishizumi, Masami Kodama, Satoshi Hirose, Reiko Hayashi, Hitoshi Sakano

Abstract read
In one paragraph

Article in Molecular and cellular biology, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Autoinhibition of DNA cleavage mediated by RAG1 and RAG2 is overcome by an epigenetic signal in V(D)J recombination.Proceedings of the National Academy of Sciences of the United States of America · 2010
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Tadashi NishiharaDepartment of Biophysics and Biochemistry, Graduate School of Science, The University of Tokyo, Bunkyo-ku, Tokyo 113-0032, Japan.
Fumikiyo Nagawa
Hirofumi Nishizumi
Masami Kodama
Satoshi Hirose
Reiko Hayashi
Hitoshi Sakano

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The postcleavage complex involved in V(D)J joining is known to possess a transpositional strand transfer activity, whose physiological role is yet to be clarified. Here we report that RAG1 and RAG2 proteins in the signal end (SE) complex cleave the 3'-overhanging structure of the synthetic coding-end (CE) DNA in two successive steps in vitro. The 3'-overhanging structure is attacked by the SE complex imprecisely, near the double-stranded/single-stranded (ds/ss) junction, and transferred to the SE. The transferred overhang is then resolved and cleaved precisely at the ds/ss junction, generating either the linear or the circular cleavage products. Thus, the blunt-end structure is restored for the SE and variably processed ends are generated for the synthetic CE. This 3'-processing activity is observed not only with the core RAG2 but also with the full-length protein.

Indexed as

Recombination, GeneticAnimalsBase SequenceCell LineDNADNA-Binding ProteinsDNA, CircularHomeodomain ProteinsHumansImmunoglobulin Joining RegionMacromolecular SubstancesNuclear ProteinsNucleic Acid ConformationProtein Sorting SignalsReceptors, AntigenDNADNA-Binding ProteinsDNA, CircularHomeodomain ProteinsImmunoglobulin Joining RegionMacromolecular SubstancesNuclear ProteinsProtein Sorting SignalsRAG-1 proteinRAG2 protein, humanReceptors, AntigenV(D)J recombination activating protein 2

Identifiers

PMID15082765
PMCPMC387758

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.