Evidence map›Paper›PMID 15082546›Full record

ArticleGenetics2004

Mutation accumulation in populations of varying size: the distribution of mutational effects for fitness correlates in Caenorhabditis elegans.

Suzanne Estes, Patrick C Phillips, Dee R Denver, W Kelley Thomas, Michael Lynch

Open access · bronzeAbstract readComparative Study
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
4.9field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 116 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 1 country.

Suzanne EstesCenter for Ecology and Evolutionary Biology, University of Oregon, Eugene, Oregon 97403, USA. estessu@science.oregonstate.edu
Patrick C Phillips
Dee R Denver
W Kelley Thomas
Michael Lynch
Indiana University Bloomington · USUniversity of Oregon · USUniversity of New Hampshire · US

Funding

The Rate and Molecular Spectrum of Spontaneous MutationsR01GM036827 · NIGMS · UNIVERSITY OF OREGON · PI LYNCH, MICHAEL R · 1988 to 2016
$5.7M
QUANITITATIVE TRAIT LOCI FOR CHEMOSENSATIONR01GM054185 · NIGMS · UNIVERSITY OF TEXAS ARLINGTON · PI PHILLIPS, PATRICK C. · 1998 to 2002
$452k
NIGMS NIH HHS GM-07413NIGMS NIH HHS GM36827NIGMS NIH HHS GM54185
6 · The paper itself

Abstract

The consequences of mutation for population-genetic and evolutionary processes depend on the rate and, especially, the frequency distribution of mutational effects on fitness. We sought to approximate the form of the distribution of mutational effects by conducting divergence experiments in which lines of a DNA repair-deficient strain of Caenorhabditis elegans, msh-2, were maintained at a range of population sizes. Assays of these lines conducted in parallel with the ancestral control suggest that the mutational variance is dominated by contributions from highly detrimental mutations. This was evidenced by the ability of all but the smallest population-size treatments to maintain relatively high levels of mean fitness even under the 100-fold increase in mutational pressure caused by knocking out the msh-2 gene. However, we show that the mean fitness decline experienced by larger populations is actually greater than expected on the basis of our estimates of mutational parameters, which could be consistent with the existence of a common class of mutations with small individual effects. Further, comparison of the total mutation rate estimated from direct sequencing of DNA to that detected from phenotypic analyses implies the existence of a large class of evolutionarily relevant mutations with no measurable effect on laboratory fitness.

Indexed as

Genetics, PopulationMutationSelection, GeneticAmino Acid SubstitutionAnimalsBiological EvolutionCaenorhabditis elegansCaenorhabditis elegans ProteinsDNA RepairGenes, HelminthGenetic VariationMutS DNA Mismatch-Binding ProteinPopulation DensitySequence Analysis, DNACaenorhabditis elegans Proteinsmsh-2 protein, C elegansMutS DNA Mismatch-Binding Protein

Identifiers

PMID15082546
PMCPMC1470770
OpenAlexW2161538889

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.