Evidence map›Paper›PMID 15082542›Full record

ArticleGenetics2004

Genetic interactions of DST1 in Saccharomyces cerevisiae suggest a role of TFIIS in the initiation-elongation transition.

Francisco Malagon, Amy H Tong, Brenda K Shafer, Jeffrey N Strathern

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 53 citations in OpenAlex.

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  4. Elongin functions as a loading factor for Mediator at ATF6α-regulated ER stress response genes.Proceedings of the National Academy of Sciences of the United States of America · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Francisco MalagonGene Regulation and Chromosome Biology Laboratory, National Cancer Institute, National Institutes of Health, Frederick, Maryland 21702, USA.
Amy H Tong
Brenda K Shafer
Jeffrey N Strathern
National Cancer Institute · USFrederick National Laboratory for Cancer Research · USUniversity of Toronto · CA

Funding

Recombination and RegulationZIABC010380 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STRATHERN, JEFFREY · 2009 to 2016
$5.5M
RECOMBINATION AND REGULATIONZ01BC010380 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI STRATHERN, JEFFREY · 2000 to 2008
$1.5M
6 · The paper itself

Abstract

TFIIS promotes the intrinsic ability of RNA polymerase II to cleave the 3'-end of the newly synthesized RNA. This stimulatory activity of TFIIS, which is dependent upon Rpb9, facilitates the resumption of transcription elongation when the polymerase stalls or arrests. While TFIIS has a pronounced effect on transcription elongation in vitro, the deletion of DST1 has no major effect on cell viability. In this work we used a genetic approach to increase our knowledge of the role of TFIIS in vivo. We showed that: (1) dst1 and rpb9 mutants have a synthetic growth defective phenotype when combined with fyv4, gim5, htz1, yal011w, ybr231c, soh1, vps71, and vps72 mutants that is exacerbated during germination or at high salt concentrations; (2) TFIIS and Rpb9 are essential when the cells are challenged with microtubule-destabilizing drugs; (3) among the SDO (synthetic with Dst one), SOH1 shows the strongest genetic interaction with DST1; (4) the presence of multiple copies of TAF14, SUA7, GAL11, RTS1, and TYS1 alleviate the growth phenotype of dst1 soh1 mutants; and (5) SRB5 and SIN4 genetically interact with DST1. We propose that TFIIS is required under stress conditions and that TFIIS is important for the transition between initiation and elongation in vivo.

Indexed as

BenomylDNA-Binding ProteinsFungal ProteinsFungicides, IndustrialGene DeletionGenes, FungalMicrobial Sensitivity TestsNocodazoleSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSaltsThiabendazoleTranscriptional Elongation FactorsBenomylDNA-Binding ProteinsDST1 protein, S cerevisiaeFungal ProteinsFungicides, IndustrialNocodazoleSaccharomyces cerevisiae ProteinsSaltsThiabendazoleTranscriptional Elongation Factorstranscription factor S-II

Identifiers

PMID15082542
PMCPMC1470799
OpenAlexW2002957811

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.