Evidence map›Paper›PMID 15082530›Full record

ArticleGenes & development2004

BRU1, a novel link between responses to DNA damage and epigenetic gene silencing in Arabidopsis.

Shin Takeda, Zerihun Tadele, Ingo Hofmann, Aline V Probst, Karel J Angelis, Hidetaka Kaya, Takashi Araki, Tesfaye Mengiste, Ortrun Mittelsten Scheid, Kei-ichi Shibahara and 2 more

Open access · diamondAbstract read
In one paragraph

Article in Genes & development, 2004. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 96 papers.

0numbers the graph read from it
0cells of the map it votes in
96citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

96 citing papers in PubMed, 219 citations in OpenAlex.

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  14. The role of ATXR6 expression in modulating genome stability and transposable element repression inProceedings of the National Academy of Sciences of the United States of America · 2022
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36 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 7 institutions in 4 countries.

Shin TakedaFriedrich Miescher Institute for Biomedical Research, 4058 Basel, Switzerland. shin.takeda@bioveg.unige.ch
Zerihun Tadele
Ingo Hofmann
Aline V Probst
Karel J Angelis
Hidetaka Kaya
Takashi Araki
Tesfaye Mengiste
Ortrun Mittelsten Scheid
Kei-ichi Shibahara
Dierk Scheel
Jerzy Paszkowski
University of Geneva · CHLeibniz Institute of Plant Biochemistry · DENational Institute of Genetics · JPCzech Academy of Sciences, Institute of Experimental Botany · CZFriedrich Miescher Institute · CHJapan Science and Technology Agency · JPKyoto University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

DNA repair associated with DNA replication is important for the conservation of genomic sequence information, whereas reconstitution of chromatin after replication sustains epigenetic information. We have isolated and characterized mutations in the BRU1 gene of Arabidopsis that suggest a novel link between these underlying maintenance mechanisms. Bru1 plants are highly sensitive to genotoxic stress and show stochastic release of transcriptional gene silencing. They also show increased intrachromosomal homologous recombination and constitutively activated expression of poly (ADP-ribose) polymerase-2 (AtPARP-2), the induction of which is associated with elevated DNA damage. Bru1 mutations affect the stability of heterochromatin organization but do not interfere with genome-wide DNA methylation. BRU1 encodes a novel nuclear protein with two predicted protein-protein interaction domains. The developmental abnormalities characteristic of bru1 mutant plants resemble those triggered by mutations in genes encoding subunits of chromatin assembly factor (CAF-1), the condensin complex, or MRE11. Comparison of bru1 with these mutants indicates cooperative roles in the replication and stabilization of chromatin structure, providing a novel link between chromatin replication, epigenetic inheritance, S-phase DNA damage checkpoints, and the regulation of meristem development.

Indexed as

DNA DamageGene SilencingArabidopsisChromatin Assembly Factor-1Chromosomal Proteins, Non-HistoneCloning, MolecularComet AssayDNA-Binding ProteinsDNA MethylationDNA, PlantDNA ReplicationEndodeoxyribonucleasesEpigenesis, GeneticExodeoxyribonucleasesGene Expression Regulation, PlantGenes, PlantChromatin Assembly Factor-1Chromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA, PlantEndodeoxyribonucleasesExodeoxyribonucleasesHeterochromatinMRE11 protein, S cerevisiaeRNA, MessengerSaccharomyces cerevisiae Proteins

Identifiers

PMID15082530
PMCPMC387418
OpenAlexW2149102517

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.